Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2376 and Shewana3_2377 are separated by 45 nucleotides Shewana3_2377 and Shewana3_2378 are separated by 190 nucleotides Shewana3_2378 and Shewana3_2379 are separated by 167 nucleotides Shewana3_2379 and Shewana3_2380 are separated by 38 nucleotides
Shewana3_2376: Shewana3_2376 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 2,855,888 to 2,857,363
_2376
Shewana3_2377: Shewana3_2377 - peptidyl-prolyl cis-trans isomerase B (RefSeq), at 2,857,409 to 2,857,909
_2377
Shewana3_2378: Shewana3_2378 - iron-containing alcohol dehydrogenase (RefSeq), at 2,858,100 to 2,859,713
_2378
Shewana3_2379: Shewana3_2379 - hypothetical protein (RefSeq), at 2,859,881 to 2,860,339
_2379
Shewana3_2380: Shewana3_2380 - putative transglycosylase (RefSeq), at 2,860,378 to 2,861,379
_2380
Position (kb)
2858
2859
2860 Strain fitness (log2 ratio)
-1
0
1 at 2857.151 kb on - strand, within Shewana3_2376 at 2857.274 kb on - strand at 2857.544 kb on + strand, within Shewana3_2377 at 2859.793 kb on + strand at 2859.988 kb on - strand, within Shewana3_2379 at 2860.140 kb on + strand, within Shewana3_2379 at 2860.148 kb on - strand, within Shewana3_2379 at 2860.215 kb on - strand, within Shewana3_2379 at 2860.254 kb on + strand, within Shewana3_2379 at 2860.453 kb on - strand at 2860.589 kb on - strand, within Shewana3_2380 at 2860.589 kb on - strand, within Shewana3_2380
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 2,857,151 - Shewana3_2376 0.86 -0.7 2,857,274 - -0.2 2,857,544 + Shewana3_2377 0.27 -0.0 2,859,793 + -0.6 2,859,988 - Shewana3_2379 0.23 -0.8 2,860,140 + Shewana3_2379 0.56 -0.8 2,860,148 - Shewana3_2379 0.58 +0.4 2,860,215 - Shewana3_2379 0.73 -1.7 2,860,254 + Shewana3_2379 0.81 -0.9 2,860,453 - +0.3 2,860,589 - Shewana3_2380 0.21 -0.9 2,860,589 - Shewana3_2380 0.21 +0.4
Or see this region's nucleotide sequence