Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2378

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2376 and Shewana3_2377 are separated by 45 nucleotidesShewana3_2377 and Shewana3_2378 are separated by 190 nucleotidesShewana3_2378 and Shewana3_2379 are separated by 167 nucleotidesShewana3_2379 and Shewana3_2380 are separated by 38 nucleotides Shewana3_2376: Shewana3_2376 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 2,855,888 to 2,857,363 _2376 Shewana3_2377: Shewana3_2377 - peptidyl-prolyl cis-trans isomerase B (RefSeq), at 2,857,409 to 2,857,909 _2377 Shewana3_2378: Shewana3_2378 - iron-containing alcohol dehydrogenase (RefSeq), at 2,858,100 to 2,859,713 _2378 Shewana3_2379: Shewana3_2379 - hypothetical protein (RefSeq), at 2,859,881 to 2,860,339 _2379 Shewana3_2380: Shewana3_2380 - putative transglycosylase (RefSeq), at 2,860,378 to 2,861,379 _2380 Position (kb) 2858 2859 2860Strain fitness (log2 ratio) -1 0 1at 2857.151 kb on - strand, within Shewana3_2376at 2857.274 kb on - strandat 2857.544 kb on + strand, within Shewana3_2377at 2859.793 kb on + strandat 2859.988 kb on - strand, within Shewana3_2379at 2860.140 kb on + strand, within Shewana3_2379at 2860.148 kb on - strand, within Shewana3_2379at 2860.215 kb on - strand, within Shewana3_2379at 2860.254 kb on + strand, within Shewana3_2379at 2860.453 kb on - strandat 2860.589 kb on - strand, within Shewana3_2380at 2860.589 kb on - strand, within Shewana3_2380

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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2,857,151 - Shewana3_2376 0.86 -0.7
2,857,274 - -0.2
2,857,544 + Shewana3_2377 0.27 -0.0
2,859,793 + -0.6
2,859,988 - Shewana3_2379 0.23 -0.8
2,860,140 + Shewana3_2379 0.56 -0.8
2,860,148 - Shewana3_2379 0.58 +0.4
2,860,215 - Shewana3_2379 0.73 -1.7
2,860,254 + Shewana3_2379 0.81 -0.9
2,860,453 - +0.3
2,860,589 - Shewana3_2380 0.21 -0.9
2,860,589 - Shewana3_2380 0.21 +0.4

Or see this region's nucleotide sequence