Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2376

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2375 and Shewana3_2376 are separated by 311 nucleotidesShewana3_2376 and Shewana3_2377 are separated by 45 nucleotidesShewana3_2377 and Shewana3_2378 are separated by 190 nucleotides Shewana3_2375: Shewana3_2375 - putative lipoprotein (RefSeq), at 2,853,786 to 2,855,576 _2375 Shewana3_2376: Shewana3_2376 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 2,855,888 to 2,857,363 _2376 Shewana3_2377: Shewana3_2377 - peptidyl-prolyl cis-trans isomerase B (RefSeq), at 2,857,409 to 2,857,909 _2377 Shewana3_2378: Shewana3_2378 - iron-containing alcohol dehydrogenase (RefSeq), at 2,858,100 to 2,859,713 _2378 Position (kb) 2855 2856 2857 2858Strain fitness (log2 ratio) -1 0 1at 2855.006 kb on + strand, within Shewana3_2375at 2855.006 kb on + strand, within Shewana3_2375at 2855.014 kb on - strand, within Shewana3_2375at 2855.026 kb on + strand, within Shewana3_2375at 2855.026 kb on + strand, within Shewana3_2375at 2855.373 kb on + strand, within Shewana3_2375at 2855.704 kb on + strandat 2855.847 kb on + strandat 2855.847 kb on + strandat 2855.855 kb on - strandat 2855.952 kb on - strandat 2855.979 kb on - strandat 2856.056 kb on - strand, within Shewana3_2376at 2856.285 kb on - strand, within Shewana3_2376at 2856.369 kb on + strand, within Shewana3_2376at 2856.720 kb on + strand, within Shewana3_2376at 2856.818 kb on + strand, within Shewana3_2376at 2856.949 kb on + strand, within Shewana3_2376at 2857.151 kb on - strand, within Shewana3_2376at 2857.274 kb on - strandat 2857.544 kb on + strand, within Shewana3_2377

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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2,855,006 + Shewana3_2375 0.68 +0.2
2,855,006 + Shewana3_2375 0.68 -1.6
2,855,014 - Shewana3_2375 0.69 -0.8
2,855,026 + Shewana3_2375 0.69 +0.4
2,855,026 + Shewana3_2375 0.69 -0.4
2,855,373 + Shewana3_2375 0.89 -0.7
2,855,704 + -1.2
2,855,847 + +1.0
2,855,847 + +0.4
2,855,855 - -0.3
2,855,952 - +0.2
2,855,979 - +0.2
2,856,056 - Shewana3_2376 0.11 -0.6
2,856,285 - Shewana3_2376 0.27 -0.3
2,856,369 + Shewana3_2376 0.33 -0.7
2,856,720 + Shewana3_2376 0.56 -0.8
2,856,818 + Shewana3_2376 0.63 -1.1
2,856,949 + Shewana3_2376 0.72 +1.0
2,857,151 - Shewana3_2376 0.86 -0.7
2,857,274 - -0.2
2,857,544 + Shewana3_2377 0.27 -0.0

Or see this region's nucleotide sequence