Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2168

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2167 and Shewana3_2168 are separated by 125 nucleotidesShewana3_2168 and Shewana3_2169 are separated by 0 nucleotidesShewana3_2169 and Shewana3_2170 are separated by 3 nucleotides Shewana3_2167: Shewana3_2167 - diguanylate cyclase/phosphodiesterase (RefSeq), at 2,598,640 to 2,600,544 _2167 Shewana3_2168: Shewana3_2168 - Na(+)-translocating NADH-quinone reductase subunit E (RefSeq), at 2,600,670 to 2,601,248 _2168 Shewana3_2169: Shewana3_2169 - electron transport complex protein RnfB (RefSeq), at 2,601,249 to 2,601,830 _2169 Shewana3_2170: Shewana3_2170 - electron transport complex protein RnfC (RefSeq), at 2,601,834 to 2,604,200 _2170 Position (kb) 2600 2601 2602Strain fitness (log2 ratio) -1 0 1at 2599.694 kb on + strand, within Shewana3_2167at 2599.709 kb on + strand, within Shewana3_2167at 2599.743 kb on - strand, within Shewana3_2167at 2599.743 kb on - strand, within Shewana3_2167at 2599.748 kb on - strand, within Shewana3_2167at 2600.024 kb on + strand, within Shewana3_2167at 2600.096 kb on + strand, within Shewana3_2167at 2600.104 kb on - strand, within Shewana3_2167at 2600.258 kb on - strand, within Shewana3_2167at 2600.275 kb on + strand, within Shewana3_2167at 2600.334 kb on + strand, within Shewana3_2167at 2600.361 kb on - strandat 2600.511 kb on + strandat 2600.563 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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2,599,694 + Shewana3_2167 0.55 -1.4
2,599,709 + Shewana3_2167 0.56 -1.2
2,599,743 - Shewana3_2167 0.58 -0.4
2,599,743 - Shewana3_2167 0.58 +0.1
2,599,748 - Shewana3_2167 0.58 +0.7
2,600,024 + Shewana3_2167 0.73 +0.4
2,600,096 + Shewana3_2167 0.76 +0.4
2,600,104 - Shewana3_2167 0.77 +0.6
2,600,258 - Shewana3_2167 0.85 +0.3
2,600,275 + Shewana3_2167 0.86 -1.1
2,600,334 + Shewana3_2167 0.89 -0.5
2,600,361 - -0.1
2,600,511 + +0.8
2,600,563 - -0.4

Or see this region's nucleotide sequence