Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1985 and Shewana3_1986 are separated by 26 nucleotides Shewana3_1986 and Shewana3_1987 are separated by 391 nucleotides Shewana3_1987 and pssA are separated by 11 nucleotides
Shewana3_1985: Shewana3_1985 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase (RefSeq), at 2,363,811 to 2,365,352
_1985
Shewana3_1986: Shewana3_1986 - hypothetical protein (RefSeq), at 2,365,379 to 2,365,555
_1986
Shewana3_1987: Shewana3_1987 - hypothetical protein (RefSeq), at 2,365,947 to 2,366,279
_1987
Shewana3_1988: pssA - phosphatidylserine synthase (RefSeq), at 2,366,291 to 2,367,604
pssA
Position (kb)
2365
2366 Strain fitness (log2 ratio)
-1
0
1
2 at 2364.398 kb on + strand, within Shewana3_1985 at 2364.406 kb on - strand, within Shewana3_1985 at 2364.406 kb on - strand, within Shewana3_1985 at 2364.506 kb on + strand, within Shewana3_1985 at 2364.770 kb on - strand, within Shewana3_1985 at 2365.020 kb on - strand, within Shewana3_1985 at 2365.020 kb on - strand, within Shewana3_1985 at 2365.056 kb on - strand, within Shewana3_1985 at 2365.245 kb on + strand at 2365.253 kb on - strand at 2365.326 kb on - strand at 2365.355 kb on - strand at 2365.423 kb on + strand, within Shewana3_1986 at 2365.423 kb on + strand, within Shewana3_1986 at 2365.431 kb on - strand, within Shewana3_1986 at 2365.431 kb on - strand, within Shewana3_1986 at 2365.557 kb on + strand at 2365.647 kb on - strand at 2365.738 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 2,364,398 + Shewana3_1985 0.38 -0.0 2,364,406 - Shewana3_1985 0.39 +0.3 2,364,406 - Shewana3_1985 0.39 -0.2 2,364,506 + Shewana3_1985 0.45 +0.1 2,364,770 - Shewana3_1985 0.62 -0.1 2,365,020 - Shewana3_1985 0.78 +0.6 2,365,020 - Shewana3_1985 0.78 -1.7 2,365,056 - Shewana3_1985 0.81 +0.6 2,365,245 + -0.9 2,365,253 - -1.1 2,365,326 - +0.0 2,365,355 - +0.3 2,365,423 + Shewana3_1986 0.25 +1.9 2,365,423 + Shewana3_1986 0.25 +1.2 2,365,431 - Shewana3_1986 0.29 +0.4 2,365,431 - Shewana3_1986 0.29 +1.1 2,365,557 + -0.3 2,365,647 - +0.4 2,365,738 + +0.4
Or see this region's nucleotide sequence