Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1767

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1765 and tmk overlap by 4 nucleotidestmk and Shewana3_1767 overlap by 7 nucleotidesShewana3_1767 and Shewana3_1768 are separated by 6 nucleotidesShewana3_1768 and Shewana3_1769 are separated by 352 nucleotides Shewana3_1765: Shewana3_1765 - aminodeoxychorismate lyase (RefSeq), at 2,079,266 to 2,080,276 _1765 Shewana3_1766: tmk - thymidylate kinase (RefSeq), at 2,080,273 to 2,080,902 tmk Shewana3_1767: Shewana3_1767 - DNA polymerase III, delta prime subunit (RefSeq), at 2,080,896 to 2,081,852 _1767 Shewana3_1768: Shewana3_1768 - type IV pilus biogenesis protein pilZ (RefSeq), at 2,081,859 to 2,082,185 _1768 Shewana3_1769: Shewana3_1769 - TatD family hydrolase (RefSeq), at 2,082,538 to 2,083,338 _1769 Position (kb) 2080 2081 2082Strain fitness (log2 ratio) -1 0 1 2at 2080.078 kb on + strand, within Shewana3_1765at 2081.887 kb on + strandat 2082.021 kb on - strand, within Shewana3_1768at 2082.056 kb on + strand, within Shewana3_1768at 2082.165 kb on + strandat 2082.180 kb on + strandat 2082.180 kb on + strandat 2082.188 kb on - strandat 2082.382 kb on + strandat 2082.464 kb on - strandat 2082.608 kb on + strandat 2082.608 kb on + strandat 2082.767 kb on + strand, within Shewana3_1769

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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2,080,078 + Shewana3_1765 0.80 +0.9
2,081,887 + -0.5
2,082,021 - Shewana3_1768 0.50 +0.8
2,082,056 + Shewana3_1768 0.60 +2.1
2,082,165 + -0.5
2,082,180 + -0.1
2,082,180 + +0.8
2,082,188 - +0.5
2,082,382 + +0.1
2,082,464 - -0.9
2,082,608 + +1.1
2,082,608 + +0.9
2,082,767 + Shewana3_1769 0.29 +0.6

Or see this region's nucleotide sequence