Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0760

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0759 and Shewana3_0760 are separated by 337 nucleotidesShewana3_0760 and Shewana3_0761 are separated by 83 nucleotides Shewana3_0759: Shewana3_0759 - peptidase M13 (RefSeq), at 879,811 to 881,895 _0759 Shewana3_0760: Shewana3_0760 - ribosomal small subunit pseudouridine synthase A (RefSeq), at 882,233 to 882,940 _0760 Shewana3_0761: Shewana3_0761 - hypothetical protein (RefSeq), at 883,024 to 883,980 _0761 Position (kb) 882 883Strain fitness (log2 ratio) -1 0 1at 881.301 kb on + strand, within Shewana3_0759at 881.372 kb on + strand, within Shewana3_0759at 881.881 kb on - strandat 881.936 kb on - strandat 881.946 kb on - strandat 882.128 kb on + strandat 882.184 kb on + strandat 882.336 kb on - strand, within Shewana3_0760at 882.373 kb on + strand, within Shewana3_0760at 882.442 kb on + strand, within Shewana3_0760at 882.502 kb on - strand, within Shewana3_0760at 882.598 kb on - strand, within Shewana3_0760at 882.824 kb on + strand, within Shewana3_0760at 882.842 kb on + strand, within Shewana3_0760at 882.884 kb on + strandat 882.904 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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881,301 + Shewana3_0759 0.71 +1.1
881,372 + Shewana3_0759 0.75 -0.8
881,881 - -0.4
881,936 - +0.3
881,946 - -1.2
882,128 + +0.2
882,184 + +0.1
882,336 - Shewana3_0760 0.15 +0.6
882,373 + Shewana3_0760 0.20 +0.6
882,442 + Shewana3_0760 0.30 -1.1
882,502 - Shewana3_0760 0.38 -0.1
882,598 - Shewana3_0760 0.52 +0.3
882,824 + Shewana3_0760 0.83 -0.4
882,842 + Shewana3_0760 0.86 -0.2
882,884 + +0.2
882,904 - +0.7

Or see this region's nucleotide sequence