Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0759

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0758 and Shewana3_0759 are separated by 197 nucleotidesShewana3_0759 and Shewana3_0760 are separated by 337 nucleotides Shewana3_0758: Shewana3_0758 - hypothetical protein (RefSeq), at 878,828 to 879,613 _0758 Shewana3_0759: Shewana3_0759 - peptidase M13 (RefSeq), at 879,811 to 881,895 _0759 Shewana3_0760: Shewana3_0760 - ribosomal small subunit pseudouridine synthase A (RefSeq), at 882,233 to 882,940 _0760 Position (kb) 879 880 881 882Strain fitness (log2 ratio) -1 0 1 2at 878.881 kb on + strandat 878.910 kb on - strand, within Shewana3_0758at 878.915 kb on + strand, within Shewana3_0758at 878.928 kb on - strand, within Shewana3_0758at 879.124 kb on + strand, within Shewana3_0758at 879.191 kb on - strand, within Shewana3_0758at 879.207 kb on - strand, within Shewana3_0758at 879.281 kb on + strand, within Shewana3_0758at 879.331 kb on + strand, within Shewana3_0758at 879.414 kb on - strand, within Shewana3_0758at 879.532 kb on - strand, within Shewana3_0758at 879.642 kb on - strandat 879.878 kb on + strandat 879.886 kb on - strandat 879.886 kb on - strandat 879.886 kb on - strandat 879.934 kb on + strandat 879.942 kb on - strandat 880.132 kb on - strand, within Shewana3_0759at 880.254 kb on - strand, within Shewana3_0759at 880.417 kb on - strand, within Shewana3_0759at 880.457 kb on + strand, within Shewana3_0759at 880.463 kb on - strand, within Shewana3_0759at 880.632 kb on + strand, within Shewana3_0759at 880.670 kb on - strand, within Shewana3_0759at 880.736 kb on + strand, within Shewana3_0759at 880.870 kb on + strand, within Shewana3_0759at 880.911 kb on - strand, within Shewana3_0759at 880.916 kb on - strand, within Shewana3_0759at 881.301 kb on + strand, within Shewana3_0759at 881.372 kb on + strand, within Shewana3_0759at 881.881 kb on - strandat 881.936 kb on - strandat 881.946 kb on - strandat 882.128 kb on + strandat 882.184 kb on + strandat 882.336 kb on - strand, within Shewana3_0760at 882.373 kb on + strand, within Shewana3_0760at 882.442 kb on + strand, within Shewana3_0760at 882.502 kb on - strand, within Shewana3_0760at 882.598 kb on - strand, within Shewana3_0760at 882.824 kb on + strand, within Shewana3_0760at 882.842 kb on + strand, within Shewana3_0760at 882.884 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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878,881 + -0.6
878,910 - Shewana3_0758 0.10 +0.2
878,915 + Shewana3_0758 0.11 +0.2
878,928 - Shewana3_0758 0.13 +1.5
879,124 + Shewana3_0758 0.38 +0.3
879,191 - Shewana3_0758 0.46 +0.5
879,207 - Shewana3_0758 0.48 -0.8
879,281 + Shewana3_0758 0.58 +0.5
879,331 + Shewana3_0758 0.64 +0.5
879,414 - Shewana3_0758 0.75 +0.9
879,532 - Shewana3_0758 0.90 -0.5
879,642 - +0.6
879,878 + +1.1
879,886 - -0.2
879,886 - -0.6
879,886 - -0.7
879,934 + -0.0
879,942 - +0.4
880,132 - Shewana3_0759 0.15 +0.4
880,254 - Shewana3_0759 0.21 +0.0
880,417 - Shewana3_0759 0.29 +0.8
880,457 + Shewana3_0759 0.31 +1.7
880,463 - Shewana3_0759 0.31 +1.8
880,632 + Shewana3_0759 0.39 +0.3
880,670 - Shewana3_0759 0.41 -0.1
880,736 + Shewana3_0759 0.44 -1.2
880,870 + Shewana3_0759 0.51 +0.1
880,911 - Shewana3_0759 0.53 -0.2
880,916 - Shewana3_0759 0.53 +1.0
881,301 + Shewana3_0759 0.71 +1.1
881,372 + Shewana3_0759 0.75 -0.8
881,881 - -0.4
881,936 - +0.3
881,946 - -1.2
882,128 + +0.2
882,184 + +0.1
882,336 - Shewana3_0760 0.15 +0.6
882,373 + Shewana3_0760 0.20 +0.6
882,442 + Shewana3_0760 0.30 -1.1
882,502 - Shewana3_0760 0.38 -0.1
882,598 - Shewana3_0760 0.52 +0.3
882,824 + Shewana3_0760 0.83 -0.4
882,842 + Shewana3_0760 0.86 -0.2
882,884 + +0.2

Or see this region's nucleotide sequence