Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0758 and Shewana3_0759 are separated by 197 nucleotides Shewana3_0759 and Shewana3_0760 are separated by 337 nucleotides
Shewana3_0758: Shewana3_0758 - hypothetical protein (RefSeq), at 878,828 to 879,613
_0758
Shewana3_0759: Shewana3_0759 - peptidase M13 (RefSeq), at 879,811 to 881,895
_0759
Shewana3_0760: Shewana3_0760 - ribosomal small subunit pseudouridine synthase A (RefSeq), at 882,233 to 882,940
_0760
Position (kb)
879
880
881
882 Strain fitness (log2 ratio)
-1
0
1
2 at 878.881 kb on + strand at 878.910 kb on - strand, within Shewana3_0758 at 878.915 kb on + strand, within Shewana3_0758 at 878.928 kb on - strand, within Shewana3_0758 at 879.124 kb on + strand, within Shewana3_0758 at 879.191 kb on - strand, within Shewana3_0758 at 879.207 kb on - strand, within Shewana3_0758 at 879.281 kb on + strand, within Shewana3_0758 at 879.331 kb on + strand, within Shewana3_0758 at 879.414 kb on - strand, within Shewana3_0758 at 879.532 kb on - strand, within Shewana3_0758 at 879.642 kb on - strand at 879.878 kb on + strand at 879.886 kb on - strand at 879.886 kb on - strand at 879.886 kb on - strand at 879.934 kb on + strand at 879.942 kb on - strand at 880.132 kb on - strand, within Shewana3_0759 at 880.254 kb on - strand, within Shewana3_0759 at 880.417 kb on - strand, within Shewana3_0759 at 880.457 kb on + strand, within Shewana3_0759 at 880.463 kb on - strand, within Shewana3_0759 at 880.632 kb on + strand, within Shewana3_0759 at 880.670 kb on - strand, within Shewana3_0759 at 880.736 kb on + strand, within Shewana3_0759 at 880.870 kb on + strand, within Shewana3_0759 at 880.911 kb on - strand, within Shewana3_0759 at 880.916 kb on - strand, within Shewana3_0759 at 881.301 kb on + strand, within Shewana3_0759 at 881.372 kb on + strand, within Shewana3_0759 at 881.881 kb on - strand at 881.936 kb on - strand at 881.946 kb on - strand at 882.128 kb on + strand at 882.184 kb on + strand at 882.336 kb on - strand, within Shewana3_0760 at 882.373 kb on + strand, within Shewana3_0760 at 882.442 kb on + strand, within Shewana3_0760 at 882.502 kb on - strand, within Shewana3_0760 at 882.598 kb on - strand, within Shewana3_0760 at 882.824 kb on + strand, within Shewana3_0760 at 882.842 kb on + strand, within Shewana3_0760 at 882.884 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 878,881 + -0.6 878,910 - Shewana3_0758 0.10 +0.2 878,915 + Shewana3_0758 0.11 +0.2 878,928 - Shewana3_0758 0.13 +1.5 879,124 + Shewana3_0758 0.38 +0.3 879,191 - Shewana3_0758 0.46 +0.5 879,207 - Shewana3_0758 0.48 -0.8 879,281 + Shewana3_0758 0.58 +0.5 879,331 + Shewana3_0758 0.64 +0.5 879,414 - Shewana3_0758 0.75 +0.9 879,532 - Shewana3_0758 0.90 -0.5 879,642 - +0.6 879,878 + +1.1 879,886 - -0.2 879,886 - -0.6 879,886 - -0.7 879,934 + -0.0 879,942 - +0.4 880,132 - Shewana3_0759 0.15 +0.4 880,254 - Shewana3_0759 0.21 +0.0 880,417 - Shewana3_0759 0.29 +0.8 880,457 + Shewana3_0759 0.31 +1.7 880,463 - Shewana3_0759 0.31 +1.8 880,632 + Shewana3_0759 0.39 +0.3 880,670 - Shewana3_0759 0.41 -0.1 880,736 + Shewana3_0759 0.44 -1.2 880,870 + Shewana3_0759 0.51 +0.1 880,911 - Shewana3_0759 0.53 -0.2 880,916 - Shewana3_0759 0.53 +1.0 881,301 + Shewana3_0759 0.71 +1.1 881,372 + Shewana3_0759 0.75 -0.8 881,881 - -0.4 881,936 - +0.3 881,946 - -1.2 882,128 + +0.2 882,184 + +0.1 882,336 - Shewana3_0760 0.15 +0.6 882,373 + Shewana3_0760 0.20 +0.6 882,442 + Shewana3_0760 0.30 -1.1 882,502 - Shewana3_0760 0.38 -0.1 882,598 - Shewana3_0760 0.52 +0.3 882,824 + Shewana3_0760 0.83 -0.4 882,842 + Shewana3_0760 0.86 -0.2 882,884 + +0.2
Or see this region's nucleotide sequence