Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0586 and Shewana3_0587 are separated by 68 nucleotides Shewana3_0587 and Shewana3_0588 are separated by 14 nucleotides Shewana3_0588 and Shewana3_0589 are separated by 80 nucleotides
Shewana3_0586: Shewana3_0586 - MscS mechanosensitive ion channel (RefSeq), at 685,727 to 688,930
_0586
Shewana3_0587: Shewana3_0587 - hypothetical protein (RefSeq), at 688,999 to 689,883
_0587
Shewana3_0588: Shewana3_0588 - phosphatidylserine decarboxylase (RefSeq), at 689,898 to 690,776
_0588
Shewana3_0589: Shewana3_0589 - ribosome-associated GTPase (RefSeq), at 690,857 to 691,921
_0589
Position (kb) 689
690
691 Strain fitness (log2 ratio) -2
-1
0
1 at 689.200 kb on + strand, within Shewana3_0587 at 689.200 kb on + strand, within Shewana3_0587 at 689.252 kb on - strand, within Shewana3_0587 at 689.431 kb on + strand, within Shewana3_0587 at 689.439 kb on - strand, within Shewana3_0587 at 689.462 kb on - strand, within Shewana3_0587 at 689.462 kb on - strand, within Shewana3_0587 at 689.640 kb on + strand, within Shewana3_0587 at 689.640 kb on + strand, within Shewana3_0587 at 689.658 kb on + strand, within Shewana3_0587 at 689.740 kb on + strand, within Shewana3_0587 at 689.748 kb on - strand, within Shewana3_0587 at 689.784 kb on + strand, within Shewana3_0587 at 689.837 kb on + strand at 689.865 kb on + strand at 690.813 kb on - strand at 690.818 kb on - strand at 690.879 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 689,200 + Shewana3_0587 0.23 -0.2 689,200 + Shewana3_0587 0.23 +0.3 689,252 - Shewana3_0587 0.29 -0.4 689,431 + Shewana3_0587 0.49 +0.4 689,439 - Shewana3_0587 0.50 -1.9 689,462 - Shewana3_0587 0.52 -0.3 689,462 - Shewana3_0587 0.52 -0.2 689,640 + Shewana3_0587 0.72 +0.3 689,640 + Shewana3_0587 0.72 +0.4 689,658 + Shewana3_0587 0.74 +0.6 689,740 + Shewana3_0587 0.84 -0.4 689,748 - Shewana3_0587 0.85 +0.5 689,784 + Shewana3_0587 0.89 +0.2 689,837 + +0.1 689,865 + -0.6 690,813 - +0.0 690,818 - +0.3 690,879 - -0.2
Or see this region's nucleotide sequence