Strain Fitness in Shewanella amazonensis SB2B around Sama_3355

Experiment: LB rep1 t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB rep1 t1
3,983,032	-		Sama_3354	0.44	-0.1
3,983,051	-		Sama_3354	0.45	-0.4
3,983,130	+		Sama_3354	0.50	-0.6
3,983,131	-		Sama_3354	0.50	+1.0
3,983,162	+		Sama_3354	0.51	-1.0
3,983,166	-		Sama_3354	0.52	+1.0
3,983,166	-		Sama_3354	0.52	+0.0
3,983,244	+		Sama_3354	0.56	+1.6
3,983,244	+		Sama_3354	0.56	-1.4
3,983,244	+		Sama_3354	0.56	-1.0
3,983,244	+		Sama_3354	0.56	+1.5
3,983,244	+		Sama_3354	0.56	+0.6
3,983,244	+		Sama_3354	0.56	-0.4
3,983,244	+		Sama_3354	0.56	-0.8
3,983,245	-		Sama_3354	0.56	+2.0
3,983,245	-		Sama_3354	0.56	-0.4
3,983,245	-		Sama_3354	0.56	-0.2
3,983,245	-		Sama_3354	0.56	-1.0
3,983,245	-		Sama_3354	0.56	+0.0
3,983,265	+		Sama_3354	0.57	-1.2
3,983,265	+		Sama_3354	0.57	-1.0
3,983,266	-		Sama_3354	0.57	+1.3
3,983,266	-		Sama_3354	0.57	+0.2
3,983,266	-		Sama_3354	0.57	+1.6
3,983,266	-		Sama_3354	0.57	-0.4
3,983,266	-		Sama_3354	0.57	+1.0
3,983,266	-		Sama_3354	0.57	+1.0
3,983,282	+		Sama_3354	0.58	-0.3
3,983,283	-		Sama_3354	0.58	-0.2
3,983,283	-		Sama_3354	0.58	+0.0
3,983,341	-		Sama_3354	0.61	+0.6
3,983,353	+		Sama_3354	0.62	+0.0
3,983,369	-		Sama_3354	0.63	-0.6
3,983,415	-		Sama_3354	0.66	-1.8
3,983,460	+		Sama_3354	0.68	+0.6
3,983,474	+		Sama_3354	0.69	+0.3
3,983,474	+		Sama_3354	0.69	+1.2
3,983,474	+		Sama_3354	0.69	+1.0
3,983,475	-		Sama_3354	0.69	+0.3
3,983,475	-		Sama_3354	0.69	+0.8
3,983,475	-		Sama_3354	0.69	+1.9
3,983,475	-		Sama_3354	0.69	+0.0
3,983,607	+		Sama_3354	0.76	-0.4
3,983,607	+		Sama_3354	0.76	-0.7
3,983,607	+		Sama_3354	0.76	-0.6
3,983,607	+		Sama_3354	0.76	-1.0
3,983,607	+		Sama_3354	0.76	-1.6
3,983,607	+		Sama_3354	0.76	+0.0
3,983,607	+		Sama_3354	0.76	+1.0
3,983,608	-		Sama_3354	0.76	-0.6
3,983,608	-		Sama_3354	0.76	-2.0
3,983,608	-		Sama_3354	0.76	+0.8
3,983,608	-		Sama_3354	0.76	+1.0
3,983,608	-		Sama_3354	0.76	-0.7
3,983,609	+		Sama_3354	0.76	+0.9
3,983,609	+		Sama_3354	0.76	-0.6
3,983,609	+		Sama_3354	0.76	+0.5
3,983,610	-		Sama_3354	0.77	-1.0
3,983,610	-		Sama_3354	0.77	+0.0
3,983,632	+		Sama_3354	0.78	+0.4
3,983,633	-		Sama_3354	0.78	-0.6
3,983,633	-		Sama_3354	0.78	+1.6
3,983,690	+		Sama_3354	0.81	-0.2
3,983,690	+		Sama_3354	0.81	+0.0
3,983,690	+		Sama_3354	0.81	-1.0
3,983,691	-		Sama_3354	0.81	+0.0
3,983,694	+		Sama_3354	0.81	+0.5
3,983,694	+		Sama_3354	0.81	-0.2
3,983,694	+		Sama_3354	0.81	+0.0
3,983,694	+		Sama_3354	0.81	-0.4
3,983,694	+		Sama_3354	0.81	+0.4
3,983,695	-		Sama_3354	0.81	+0.0
3,983,695	-		Sama_3354	0.81	+0.6
3,983,695	-		Sama_3354	0.81	-1.6
3,983,695	-		Sama_3354	0.81	+1.2
3,983,695	-		Sama_3354	0.81	-0.2
3,983,695	-		Sama_3354	0.81	+0.0
3,983,695	-		Sama_3354	0.81	-0.4
3,983,695	-		Sama_3354	0.81	+2.0
3,983,695	-		Sama_3354	0.81	+0.0
3,983,695	-		Sama_3354	0.81	-0.6
3,983,695	-		Sama_3354	0.81	-1.6
3,983,697	+		Sama_3354	0.81	+0.0
3,983,745	+		Sama_3354	0.84	-0.3
3,983,754	-		Sama_3354	0.85	-1.4
3,983,764	+		Sama_3354	0.85	+0.0
3,983,764	+		Sama_3354	0.85	-0.9
3,983,765	-		Sama_3354	0.85	+0.0
3,983,821	+		Sama_3354	0.88	-1.6
3,983,822	-		Sama_3354	0.88	+1.0
3,983,858	+				+0.4
3,983,859	-				-0.4
3,983,859	-				+0.4
3,983,891	+				-2.2
3,983,947	+				+0.3
3,983,948	-				+0.2
3,984,013	+				+0.0
3,984,013	+				+0.1
3,984,013	+				+0.0
3,984,013	+				+0.0
3,984,014	-				+0.6
3,984,014	-				+1.0
3,984,014	-				+0.0
3,984,014	-				+1.2
3,984,132	+		Sama_3355	0.32	+0.8
3,984,132	+		Sama_3355	0.32	-2.4
3,984,133	-		Sama_3355	0.33	-0.2
3,984,133	-		Sama_3355	0.33	-1.0
3,984,133	-		Sama_3355	0.33	-0.7
3,984,133	-		Sama_3355	0.33	+0.0
3,984,133	-		Sama_3355	0.33	+0.0
3,984,135	+		Sama_3355	0.33	+0.0
3,984,136	-		Sama_3355	0.34	+0.3
3,984,136	-		Sama_3355	0.34	-1.6
3,984,136	-		Sama_3355	0.34	-1.6
3,984,155	+		Sama_3355	0.39	-2.6
3,984,156	-		Sama_3355	0.40	+0.0
3,984,216	+		Sama_3355	0.58	+0.0
3,984,217	-		Sama_3355	0.58	-1.0
3,984,217	-		Sama_3355	0.58	+0.0
3,984,260	+		Sama_3355	0.72	-0.3
3,984,260	+		Sama_3355	0.72	-0.7
3,984,260	+		Sama_3355	0.72	-0.7
3,984,261	-		Sama_3355	0.72	-1.0
3,984,261	-		Sama_3355	0.72	+1.0
3,984,261	-		Sama_3355	0.72	-1.0
3,984,277	+		Sama_3355	0.77	+0.0
3,984,277	+		Sama_3355	0.77	+1.6
3,984,301	+		Sama_3355	0.84	-1.0
3,984,301	+		Sama_3355	0.84	+0.4
3,984,302	-		Sama_3355	0.84	-1.7
3,984,323	-				+0.4
3,984,337	+				-1.2
3,984,337	+				-0.6
3,984,338	-				+0.1
3,984,338	-				+1.6
3,984,354	-				+0.0
3,984,429	+				+0.8
3,984,440	+				-1.4
3,984,440	+				+0.6
3,984,447	+				-0.7
3,985,053	+				-1.0
3,985,053	+				-1.8
3,985,054	-				+1.0
3,985,054	-				-0.2
3,985,054	-				-0.2
3,985,054	-				+1.1
3,985,082	-				+1.4
3,985,116	+		Sama_3357	0.12	+0.6
3,985,117	-		Sama_3357	0.12	-0.2
3,985,246	+		Sama_3357	0.35	-2.0
3,985,247	-		Sama_3357	0.35	-1.4
3,985,308	+		Sama_3357	0.46	+0.7
3,985,308	+		Sama_3357	0.46	-1.0
3,985,315	+		Sama_3357	0.47	-2.3
3,985,348	-		Sama_3357	0.53	-1.0
3,985,348	-		Sama_3357	0.53	+1.0
3,985,348	-		Sama_3357	0.53	-2.0
3,985,348	-		Sama_3357	0.53	-0.3