Strain Fitness in Shewanella amazonensis SB2B around Sama_2118

Experiment: LB rep1 t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB rep1 t1
2,560,873	+		Sama_2117	0.14	-0.6
2,561,021	+		Sama_2117	0.26	-0.7
2,561,030	-		Sama_2117	0.27	+0.5
2,561,041	+		Sama_2117	0.28	-0.8
2,561,073	+		Sama_2117	0.31	-0.1
2,561,073	+		Sama_2117	0.31	-2.4
2,561,073	+		Sama_2117	0.31	-0.1
2,561,074	-		Sama_2117	0.31	+1.3
2,561,074	-		Sama_2117	0.31	+1.5
2,561,127	+		Sama_2117	0.35	+0.9
2,561,128	-		Sama_2117	0.35	-1.6
2,561,128	-		Sama_2117	0.35	+1.9
2,561,173	+		Sama_2117	0.39	+0.4
2,561,225	+		Sama_2117	0.44	-0.4
2,561,226	-		Sama_2117	0.44	+0.3
2,561,249	+		Sama_2117	0.46	-0.6
2,561,249	+		Sama_2117	0.46	+1.5
2,561,249	+		Sama_2117	0.46	-0.1
2,561,250	-		Sama_2117	0.46	-1.1
2,561,275	-		Sama_2117	0.48	-0.5
2,561,284	+		Sama_2117	0.49	+2.3
2,561,284	+		Sama_2117	0.49	+0.5
2,561,285	-		Sama_2117	0.49	+0.4
2,561,285	-		Sama_2117	0.49	+0.4
2,561,285	-		Sama_2117	0.49	+0.6
2,561,290	+		Sama_2117	0.49	+0.2
2,561,290	+		Sama_2117	0.49	+0.2
2,561,290	+		Sama_2117	0.49	+0.9
2,561,291	-		Sama_2117	0.49	+0.1
2,561,291	-		Sama_2117	0.49	+0.8
2,561,291	-		Sama_2117	0.49	-0.1
2,561,318	+		Sama_2117	0.51	+0.7
2,561,318	+		Sama_2117	0.51	-0.1
2,561,318	+		Sama_2117	0.51	-1.1
2,561,318	+		Sama_2117	0.51	-0.1
2,561,318	+		Sama_2117	0.51	-0.6
2,561,319	-		Sama_2117	0.51	-0.8
2,561,344	+		Sama_2117	0.54	-0.6
2,561,385	+		Sama_2117	0.57	+0.9
2,561,394	+		Sama_2117	0.58	+0.1
2,561,394	+		Sama_2117	0.58	-0.4
2,561,395	-		Sama_2117	0.58	-0.8
2,561,395	-		Sama_2117	0.58	+0.5
2,561,434	+		Sama_2117	0.61	+0.1
2,561,434	+		Sama_2117	0.61	+1.5
2,561,571	-		Sama_2117	0.73	-0.1
2,561,663	+		Sama_2117	0.80	-0.1
2,561,664	-		Sama_2117	0.80	+1.1
2,561,664	-		Sama_2117	0.80	+0.8
2,561,664	-		Sama_2117	0.80	-0.3
2,561,664	-		Sama_2117	0.80	+0.9
2,561,664	-		Sama_2117	0.80	-0.1
2,561,670	-		Sama_2117	0.81	+1.9
2,561,680	+		Sama_2117	0.82	+0.9
2,561,681	-		Sama_2117	0.82	-1.1
2,561,724	-		Sama_2117	0.85	-0.1
2,561,731	-		Sama_2117	0.86	+0.2
2,561,731	-		Sama_2117	0.86	-0.9
2,561,765	+		Sama_2117	0.89	+0.7
2,561,765	+		Sama_2117	0.89	+0.4
2,561,839	-				-1.6
2,562,066	-		Sama_2118	0.20	+0.2
2,562,185	+		Sama_2118	0.31	+0.9
2,562,185	+		Sama_2118	0.31	+0.4
2,562,186	-		Sama_2118	0.31	-0.1
2,562,186	-		Sama_2118	0.31	+1.3
2,562,186	-		Sama_2118	0.31	-0.3
2,562,195	+		Sama_2118	0.32	-0.1
2,562,196	-		Sama_2118	0.32	+0.9
2,562,205	+		Sama_2118	0.33	-0.5
2,562,205	+		Sama_2118	0.33	-2.6
2,562,205	+		Sama_2118	0.33	-0.8
2,562,205	+		Sama_2118	0.33	-1.1
2,562,206	-		Sama_2118	0.33	-0.1
2,562,206	-		Sama_2118	0.33	+0.9
2,562,206	-		Sama_2118	0.33	-0.4
2,562,209	+		Sama_2118	0.34	-0.8
2,562,209	+		Sama_2118	0.34	-2.1
2,562,209	+		Sama_2118	0.34	+2.3
2,562,209	+		Sama_2118	0.34	+1.8
2,562,210	-		Sama_2118	0.34	+0.1
2,562,210	-		Sama_2118	0.34	-1.1
2,562,210	-		Sama_2118	0.34	-0.6
2,562,210	-		Sama_2118	0.34	-0.6
2,562,210	-		Sama_2118	0.34	-0.4
2,562,211	+		Sama_2118	0.34	+0.5
2,562,211	+		Sama_2118	0.34	-1.1
2,562,211	+		Sama_2118	0.34	-0.7
2,562,211	+		Sama_2118	0.34	+0.4
2,562,211	+		Sama_2118	0.34	-0.5
2,562,211	+		Sama_2118	0.34	-1.1
2,562,211	+		Sama_2118	0.34	-1.1
2,562,211	+		Sama_2118	0.34	+0.9
2,562,212	-		Sama_2118	0.34	-0.1
2,562,212	-		Sama_2118	0.34	-0.8
2,562,212	-		Sama_2118	0.34	-1.6
2,562,212	-		Sama_2118	0.34	-0.4
2,562,212	-		Sama_2118	0.34	-0.1
2,562,262	+		Sama_2118	0.39	+2.3
2,562,263	-		Sama_2118	0.39	-2.1
2,562,332	+		Sama_2118	0.45	+0.9
2,562,354	-		Sama_2118	0.47	+0.9
2,562,433	-		Sama_2118	0.54	-0.7
2,562,452	+		Sama_2118	0.56	+0.4
2,562,452	+		Sama_2118	0.56	+0.9
2,562,453	-		Sama_2118	0.56	-0.5
2,562,497	+		Sama_2118	0.60	+0.4
2,562,589	+		Sama_2118	0.69	-0.3
2,562,590	-		Sama_2118	0.69	-0.5
2,562,603	+		Sama_2118	0.70	-0.1
2,562,677	+		Sama_2118	0.77	+0.8
2,562,677	+		Sama_2118	0.77	-0.9
2,562,677	+		Sama_2118	0.77	+3.1
2,562,678	-		Sama_2118	0.77	+0.4
2,562,681	+		Sama_2118	0.77	-0.8
2,562,681	+		Sama_2118	0.77	-1.4
2,562,681	+		Sama_2118	0.77	+1.2
2,562,682	-		Sama_2118	0.78	-0.2
2,562,682	-		Sama_2118	0.78	-0.7
2,562,682	-		Sama_2118	0.78	-1.6
2,562,902	-				-1.6
2,562,917	+				+0.9
2,562,917	+				-1.1
2,562,918	-				-0.1
2,562,918	-				+0.9
2,562,918	-				-0.1
2,562,918	-				+0.8
2,562,918	-				+0.9
2,562,934	+				+1.5
2,562,934	+				+1.1
2,562,934	+				-0.1
2,562,934	+				+0.9
2,562,935	-				+1.3
2,562,956	+				+0.3
2,562,956	+				-1.1
2,562,957	-				-1.6
2,562,957	-				+0.5
2,562,957	-				-0.5
2,562,958	+				-0.3
2,562,959	-				+0.9
2,562,965	+				+0.9
2,562,966	-				+1.7
2,562,966	-				+1.5
2,562,966	-				+1.4
2,563,058	+				+0.2
2,563,058	+				+0.1
2,563,060	+				-0.3
2,563,061	-				-0.8
2,563,062	+				+0.8
2,563,062	+				-0.6
2,563,062	+				-0.5
2,563,062	+				-0.1
2,563,062	+				-0.3
2,563,062	+				+0.5
2,563,063	-				-0.1
2,563,063	-				+0.4
2,563,194	-		Sama_2119	0.11	-0.3
2,563,334	-		Sama_2119	0.25	-0.1
2,563,334	-		Sama_2119	0.25	-2.4
2,563,353	-		Sama_2119	0.27	+1.3
2,563,440	-		Sama_2119	0.36	+1.5
2,563,466	-		Sama_2119	0.38	-0.8
2,563,555	+		Sama_2119	0.47	-0.1
2,563,556	-		Sama_2119	0.47	+0.7
2,563,586	-		Sama_2119	0.50	+0.5
2,563,586	-		Sama_2119	0.50	-0.7
2,563,586	-		Sama_2119	0.50	+0.2
2,563,683	+		Sama_2119	0.59	+0.9
2,563,684	-		Sama_2119	0.60	-0.1
2,563,684	-		Sama_2119	0.60	-0.6
2,563,684	-		Sama_2119	0.60	+0.9
2,563,684	-		Sama_2119	0.60	-2.6
2,563,684	-		Sama_2119	0.60	-0.1
2,563,684	-		Sama_2119	0.60	-0.7
2,563,684	-		Sama_2119	0.60	+0.9
2,563,684	-		Sama_2119	0.60	-2.1
2,563,767	+		Sama_2119	0.68	-0.1
2,563,777	-		Sama_2119	0.69	-0.7
2,563,777	-		Sama_2119	0.69	+0.5
2,563,777	-		Sama_2119	0.69	+1.3
2,563,836	-		Sama_2119	0.75	-0.1
2,563,836	-		Sama_2119	0.75	-0.8
2,563,902	-		Sama_2119	0.81	+0.1
2,563,919	+		Sama_2119	0.83	+1.9