Strain Fitness in Shewanella amazonensis SB2B around Sama_0815

Experiment: LB rep1 t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB rep1 t1
998,918	+		Sama_0814	0.23	-0.7
998,919	-		Sama_0814	0.23	+0.0
999,005	-		Sama_0814	0.30	+1.0
999,010	+		Sama_0814	0.30	+1.3
999,010	+		Sama_0814	0.30	-1.2
999,010	+		Sama_0814	0.30	-1.3
999,011	-		Sama_0814	0.30	-1.0
999,011	-		Sama_0814	0.30	+0.3
999,011	-		Sama_0814	0.30	-0.4
999,013	+		Sama_0814	0.30	-1.0
999,032	-		Sama_0814	0.32	+1.3
999,032	-		Sama_0814	0.32	+0.4
999,047	+		Sama_0814	0.33	-0.4
999,048	-		Sama_0814	0.33	+0.0
999,072	+		Sama_0814	0.35	+0.0
999,113	+		Sama_0814	0.38	+1.3
999,113	+		Sama_0814	0.38	+1.3
999,113	+		Sama_0814	0.38	-0.6
999,113	+		Sama_0814	0.38	-2.0
999,113	+		Sama_0814	0.38	+0.7
999,113	+		Sama_0814	0.38	-0.6
999,113	+		Sama_0814	0.38	-0.5
999,113	+		Sama_0814	0.38	-1.3
999,114	-		Sama_0814	0.38	-0.1
999,114	-		Sama_0814	0.38	-1.4
999,114	-		Sama_0814	0.38	+1.2
999,114	-		Sama_0814	0.38	+0.7
999,114	-		Sama_0814	0.38	-0.7
999,114	-		Sama_0814	0.38	+1.9
999,114	-		Sama_0814	0.38	-0.5
999,114	-		Sama_0814	0.38	+0.5
999,114	-		Sama_0814	0.38	+2.3
999,117	+		Sama_0814	0.39	-1.0
999,117	+		Sama_0814	0.39	+0.5
999,117	+		Sama_0814	0.39	+1.5
999,117	+		Sama_0814	0.39	+0.0
999,117	+		Sama_0814	0.39	+0.6
999,118	-		Sama_0814	0.39	+1.6
999,118	-		Sama_0814	0.39	+0.4
999,118	-		Sama_0814	0.39	+0.9
999,118	-		Sama_0814	0.39	-0.1
999,118	-		Sama_0814	0.39	-0.4
999,160	+		Sama_0814	0.42	-0.6
999,160	+		Sama_0814	0.42	-0.1
999,161	-		Sama_0814	0.42	-0.1
999,161	-		Sama_0814	0.42	+0.0
999,161	-		Sama_0814	0.42	-0.1
999,178	+		Sama_0814	0.43	+0.3
999,179	-		Sama_0814	0.43	+0.7
999,179	-		Sama_0814	0.43	+2.6
999,243	-		Sama_0814	0.49	+0.0
999,243	-		Sama_0814	0.49	-0.6
999,243	-		Sama_0814	0.49	-0.6
999,243	-		Sama_0814	0.49	+2.0
999,269	+		Sama_0814	0.51	-1.0
999,269	+		Sama_0814	0.51	-0.2
999,270	-		Sama_0814	0.51	-0.4
999,305	-		Sama_0814	0.53	+0.9
999,325	+		Sama_0814	0.55	+1.2
999,358	+		Sama_0814	0.58	+0.0
999,358	+		Sama_0814	0.58	-1.4
999,358	+		Sama_0814	0.58	+0.0
999,358	+		Sama_0814	0.58	+0.5
999,485	+		Sama_0814	0.68	+1.0
999,563	+		Sama_0814	0.74	-1.0
999,563	+		Sama_0814	0.74	-0.2
999,563	+		Sama_0814	0.74	+2.0
999,564	-		Sama_0814	0.74	-1.0
999,564	-		Sama_0814	0.74	+0.2
999,605	+		Sama_0814	0.77	+0.2
999,606	-		Sama_0814	0.77	-0.4
999,606	-		Sama_0814	0.77	-0.6
999,606	-		Sama_0814	0.77	+1.0
999,606	-		Sama_0814	0.77	-1.0
999,606	-		Sama_0814	0.77	-1.6
999,606	-		Sama_0814	0.77	+0.4
999,606	-		Sama_0814	0.77	-0.5
999,606	-		Sama_0814	0.77	+1.6
999,610	+		Sama_0814	0.78	-0.5
999,610	+		Sama_0814	0.78	+0.3
999,610	+		Sama_0814	0.78	+1.0
999,610	+		Sama_0814	0.78	+0.0
999,610	+		Sama_0814	0.78	+0.2
999,610	+		Sama_0814	0.78	+0.0
999,611	-		Sama_0814	0.78	+1.0
999,611	-		Sama_0814	0.78	+0.4
999,653	-		Sama_0814	0.81	+1.6
999,700	-		Sama_0814	0.85	-1.0
999,700	-		Sama_0814	0.85	+0.4
999,713	+		Sama_0814	0.86	+0.7
999,714	-		Sama_0814	0.86	+0.5
999,812	+				+1.4
999,812	+				+1.6
999,813	-				-1.8
1,000,070	-		Sama_0815	0.23	-0.4
1,000,083	+		Sama_0815	0.24	+0.7
1,000,096	-		Sama_0815	0.26	-0.4
1,000,102	+		Sama_0815	0.27	+1.0
1,000,102	+		Sama_0815	0.27	+0.0
1,000,102	+		Sama_0815	0.27	+0.0
1,000,103	-		Sama_0815	0.27	-0.6
1,000,195	-		Sama_0815	0.38	-1.1
1,000,238	-		Sama_0815	0.44	+0.6
1,000,238	-		Sama_0815	0.44	+0.1
1,000,238	-		Sama_0815	0.44	-0.3
1,000,288	+		Sama_0815	0.50	+0.0
1,000,288	+		Sama_0815	0.50	+0.0
1,000,288	+		Sama_0815	0.50	-0.3
1,000,289	-		Sama_0815	0.50	+0.0
1,000,309	-		Sama_0815	0.53	-0.4
1,000,309	-		Sama_0815	0.53	-0.6
1,000,309	-		Sama_0815	0.53	-1.6
1,000,336	+		Sama_0815	0.56	+1.0
1,000,336	+		Sama_0815	0.56	-1.0
1,000,336	+		Sama_0815	0.56	-1.0
1,000,336	+		Sama_0815	0.56	+2.0
1,000,337	-		Sama_0815	0.56	+0.0
1,000,337	-		Sama_0815	0.56	-0.4
1,000,337	-		Sama_0815	0.56	-1.8
1,000,410	+		Sama_0815	0.66	-0.8
1,000,410	+		Sama_0815	0.66	-0.4
1,000,410	+		Sama_0815	0.66	+0.0
1,000,410	+		Sama_0815	0.66	+1.0
1,000,411	-		Sama_0815	0.66	-1.0
1,000,411	-		Sama_0815	0.66	-0.4
1,000,411	-		Sama_0815	0.66	-1.6
1,000,411	-		Sama_0815	0.66	-0.6
1,000,411	-		Sama_0815	0.66	-1.0
1,000,452	+		Sama_0815	0.71	+1.0
1,000,595	-		Sama_0815	0.89	+0.0
1,000,595	-		Sama_0815	0.89	+0.0
1,000,596	+		Sama_0815	0.89	+0.2
1,000,604	-				+1.0
1,000,682	-				+1.0
1,000,694	+				+0.5
1,000,694	+				-0.7
1,000,709	+				+1.0
1,000,710	-				-1.3
1,000,748	+				-1.6
1,000,780	-				+1.0
1,001,033	+		Sama_0816	0.28	-0.7
1,001,033	+		Sama_0816	0.28	+0.0
1,001,033	+		Sama_0816	0.28	-0.5
1,001,034	-		Sama_0816	0.28	-0.1
1,001,034	-		Sama_0816	0.28	-0.3
1,001,034	-		Sama_0816	0.28	-0.6
1,001,042	+		Sama_0816	0.29	+0.0
1,001,042	+		Sama_0816	0.29	+0.0
1,001,043	-		Sama_0816	0.29	-2.0
1,001,043	-		Sama_0816	0.29	+1.8
1,001,043	-		Sama_0816	0.29	-0.5
1,001,087	+		Sama_0816	0.33	+1.3
1,001,087	+		Sama_0816	0.33	+1.3
1,001,087	+		Sama_0816	0.33	-0.3
1,001,088	-		Sama_0816	0.33	+0.4
1,001,088	-		Sama_0816	0.33	+0.0
1,001,091	-		Sama_0816	0.33	-0.6
1,001,104	-		Sama_0816	0.34	-0.7
1,001,104	-		Sama_0816	0.34	+2.8
1,001,124	+		Sama_0816	0.36	+0.4
1,001,125	-		Sama_0816	0.36	+0.4
1,001,154	+		Sama_0816	0.38	+0.3
1,001,154	+		Sama_0816	0.38	+0.7
1,001,154	+		Sama_0816	0.38	-1.0
1,001,154	+		Sama_0816	0.38	+2.3
1,001,155	-		Sama_0816	0.38	-0.6
1,001,155	-		Sama_0816	0.38	+0.6
1,001,155	-		Sama_0816	0.38	+0.8
1,001,155	-		Sama_0816	0.38	-0.2
1,001,198	-		Sama_0816	0.42	-0.2
1,001,269	+		Sama_0816	0.47	-0.7
1,001,269	+		Sama_0816	0.47	+0.6
1,001,269	+		Sama_0816	0.47	+1.0
1,001,270	-		Sama_0816	0.47	+0.4
1,001,270	-		Sama_0816	0.47	-0.5
1,001,270	-		Sama_0816	0.47	+0.0
1,001,273	+		Sama_0816	0.48	+1.0
1,001,298	+		Sama_0816	0.50	-0.7
1,001,298	+		Sama_0816	0.50	+0.4
1,001,298	+		Sama_0816	0.50	+0.3
1,001,299	-		Sama_0816	0.50	+1.0
1,001,299	-		Sama_0816	0.50	-0.8
1,001,361	+		Sama_0816	0.55	+0.0
1,001,361	+		Sama_0816	0.55	-2.3
1,001,361	+		Sama_0816	0.55	-1.6
1,001,361	+		Sama_0816	0.55	-0.5
1,001,362	-		Sama_0816	0.55	+0.0
1,001,362	-		Sama_0816	0.55	-0.7
1,001,362	-		Sama_0816	0.55	-0.2
1,001,424	+		Sama_0816	0.60	-0.4
1,001,424	+		Sama_0816	0.60	+0.4
1,001,424	+		Sama_0816	0.60	+0.0
1,001,425	-		Sama_0816	0.60	-1.0
1,001,425	-		Sama_0816	0.60	-2.0
1,001,441	+		Sama_0816	0.61	-0.7
1,001,441	+		Sama_0816	0.61	+1.3
1,001,442	-		Sama_0816	0.61	+1.4
1,001,442	-		Sama_0816	0.61	+0.4
1,001,442	-		Sama_0816	0.61	-0.2
1,001,445	+		Sama_0816	0.62	+0.7
1,001,446	-		Sama_0816	0.62	+1.6
1,001,446	-		Sama_0816	0.62	-1.0
1,001,446	-		Sama_0816	0.62	-0.7
1,001,446	-		Sama_0816	0.62	+1.0
1,001,446	-		Sama_0816	0.62	+0.0
1,001,446	-		Sama_0816	0.62	-2.0
1,001,493	+		Sama_0816	0.66	-0.2
1,001,493	+		Sama_0816	0.66	+1.3
1,001,494	-		Sama_0816	0.66	+0.6
1,001,545	+		Sama_0816	0.70	+0.3
1,001,545	+		Sama_0816	0.70	+0.7
1,001,546	-		Sama_0816	0.70	-0.2
1,001,546	-		Sama_0816	0.70	+0.6
1,001,546	-		Sama_0816	0.70	+0.4
1,001,546	-		Sama_0816	0.70	-0.8
1,001,546	-		Sama_0816	0.70	-1.6
1,001,567	+		Sama_0816	0.72	-0.5
1,001,567	+		Sama_0816	0.72	-1.5
1,001,567	+		Sama_0816	0.72	-0.8
1,001,567	+		Sama_0816	0.72	-1.6
1,001,568	-		Sama_0816	0.72	-0.1
1,001,568	-		Sama_0816	0.72	+0.5
1,001,568	-		Sama_0816	0.72	-1.3
1,001,568	-		Sama_0816	0.72	+0.4
1,001,583	+		Sama_0816	0.73	+0.7
1,001,583	+		Sama_0816	0.73	-0.6
1,001,583	+		Sama_0816	0.73	-0.1
1,001,584	-		Sama_0816	0.73	-0.7
1,001,592	+		Sama_0816	0.74	+0.6
1,001,622	+		Sama_0816	0.76	-0.8
1,001,622	+		Sama_0816	0.76	+0.0
1,001,622	+		Sama_0816	0.76	+0.4
1,001,623	-		Sama_0816	0.76	-0.9
1,001,626	+		Sama_0816	0.76	+1.0
1,001,626	+		Sama_0816	0.76	-0.4
1,001,626	+		Sama_0816	0.76	+2.0