Experiment: L-Glutamic as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4072 and HP15_4073 are separated by 4 nucleotides HP15_4073 and HP15_4074 are separated by 38 nucleotides
HP15_4072: HP15_4072 - diguanylate cyclase with PAS/PAC sensor, at 4,304,969 to 4,307,230
_4072
HP15_4073: HP15_4073 - universal stress protein family protein, at 4,307,235 to 4,307,675
_4073
HP15_4074: HP15_4074 - C4-dicarboxylate transport system (permease large protein), at 4,307,714 to 4,308,985
_4074
Position (kb)
4307
4308 Strain fitness (log2 ratio)
-1
0
1
2 at 4306.271 kb on + strand, within HP15_4072 at 4306.271 kb on + strand, within HP15_4072 at 4306.279 kb on - strand, within HP15_4072 at 4306.279 kb on - strand, within HP15_4072 at 4306.279 kb on - strand, within HP15_4072 at 4306.281 kb on + strand, within HP15_4072 at 4306.294 kb on - strand, within HP15_4072 at 4306.456 kb on + strand, within HP15_4072 at 4306.464 kb on + strand, within HP15_4072 at 4306.472 kb on - strand, within HP15_4072 at 4306.658 kb on - strand, within HP15_4072 at 4306.674 kb on - strand, within HP15_4072 at 4306.697 kb on + strand, within HP15_4072 at 4306.712 kb on - strand, within HP15_4072 at 4306.806 kb on + strand, within HP15_4072 at 4307.018 kb on - strand at 4307.036 kb on + strand at 4307.054 kb on + strand at 4307.105 kb on + strand at 4307.107 kb on + strand at 4307.285 kb on - strand, within HP15_4073 at 4307.290 kb on + strand, within HP15_4073 at 4307.306 kb on + strand, within HP15_4073 at 4307.345 kb on + strand, within HP15_4073 at 4307.345 kb on + strand, within HP15_4073 at 4307.345 kb on + strand, within HP15_4073 at 4307.353 kb on + strand, within HP15_4073 at 4307.361 kb on - strand, within HP15_4073 at 4307.654 kb on - strand at 4307.684 kb on + strand at 4307.932 kb on - strand, within HP15_4074 at 4307.944 kb on - strand, within HP15_4074 at 4308.124 kb on - strand, within HP15_4074 at 4308.222 kb on + strand, within HP15_4074 at 4308.260 kb on - strand, within HP15_4074 at 4308.290 kb on + strand, within HP15_4074 at 4308.495 kb on - strand, within HP15_4074 at 4308.659 kb on - strand, within HP15_4074 at 4308.661 kb on + strand, within HP15_4074 at 4308.666 kb on + strand, within HP15_4074
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic as (N) remove 4,306,271 + HP15_4072 0.58 -0.3 4,306,271 + HP15_4072 0.58 +1.8 4,306,279 - HP15_4072 0.58 -0.0 4,306,279 - HP15_4072 0.58 +1.2 4,306,279 - HP15_4072 0.58 +0.3 4,306,281 + HP15_4072 0.58 -0.1 4,306,294 - HP15_4072 0.59 -0.2 4,306,456 + HP15_4072 0.66 -0.0 4,306,464 + HP15_4072 0.66 -0.9 4,306,472 - HP15_4072 0.66 +1.4 4,306,658 - HP15_4072 0.75 -0.6 4,306,674 - HP15_4072 0.75 +0.2 4,306,697 + HP15_4072 0.76 -1.3 4,306,712 - HP15_4072 0.77 -0.3 4,306,806 + HP15_4072 0.81 -0.8 4,307,018 - +1.0 4,307,036 + +0.0 4,307,054 + -0.3 4,307,105 + -1.0 4,307,107 + +1.0 4,307,285 - HP15_4073 0.11 -0.1 4,307,290 + HP15_4073 0.12 +1.9 4,307,306 + HP15_4073 0.16 -0.9 4,307,345 + HP15_4073 0.25 +0.4 4,307,345 + HP15_4073 0.25 +1.6 4,307,345 + HP15_4073 0.25 +1.9 4,307,353 + HP15_4073 0.27 +1.1 4,307,361 - HP15_4073 0.29 +0.2 4,307,654 - +1.6 4,307,684 + +1.0 4,307,932 - HP15_4074 0.17 -0.5 4,307,944 - HP15_4074 0.18 +1.6 4,308,124 - HP15_4074 0.32 -0.2 4,308,222 + HP15_4074 0.40 +0.4 4,308,260 - HP15_4074 0.43 -0.4 4,308,290 + HP15_4074 0.45 -0.3 4,308,495 - HP15_4074 0.61 -0.3 4,308,659 - HP15_4074 0.74 +0.0 4,308,661 + HP15_4074 0.74 +1.4 4,308,666 + HP15_4074 0.75 -0.6
Or see this region's nucleotide sequence