Experiment: L-Glutamic as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4041 and HP15_4042 overlap by 4 nucleotides HP15_4042 and HP15_4043 are separated by 95 nucleotides HP15_4043 and HP15_4044 are separated by 69 nucleotides
HP15_4041: HP15_4041 - OmpA/MotB domain protein, at 4,276,231 to 4,277,256
_4041
HP15_4042: HP15_4042 - MotA/TolQ/ExbB proton channel family protein, at 4,277,253 to 4,277,981
_4042
HP15_4043: HP15_4043 - 4-hydroxybenzoyl-CoA thioesterase, at 4,278,077 to 4,278,523
_4043
HP15_4044: HP15_4044 - ThiJ/PfpI family protein, at 4,278,593 to 4,279,294
_4044
Position (kb)
4277
4278 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4276.309 kb on - strand at 4276.397 kb on - strand, within HP15_4041 at 4276.483 kb on - strand, within HP15_4041 at 4276.499 kb on + strand, within HP15_4041 at 4276.555 kb on - strand, within HP15_4041 at 4276.592 kb on - strand, within HP15_4041 at 4276.670 kb on + strand, within HP15_4041 at 4276.678 kb on - strand, within HP15_4041 at 4276.732 kb on - strand, within HP15_4041 at 4276.893 kb on + strand, within HP15_4041 at 4276.963 kb on + strand, within HP15_4041 at 4276.972 kb on - strand, within HP15_4041 at 4277.129 kb on + strand, within HP15_4041 at 4277.251 kb on + strand at 4277.259 kb on - strand at 4277.292 kb on + strand at 4277.302 kb on + strand at 4277.313 kb on + strand at 4277.315 kb on + strand at 4277.315 kb on + strand at 4277.315 kb on + strand at 4277.323 kb on - strand at 4277.345 kb on - strand, within HP15_4042 at 4277.350 kb on - strand, within HP15_4042 at 4277.364 kb on + strand, within HP15_4042 at 4277.410 kb on - strand, within HP15_4042 at 4277.429 kb on - strand, within HP15_4042 at 4277.442 kb on + strand, within HP15_4042 at 4277.491 kb on - strand, within HP15_4042 at 4277.554 kb on + strand, within HP15_4042 at 4277.653 kb on - strand, within HP15_4042 at 4277.667 kb on - strand, within HP15_4042 at 4277.772 kb on - strand, within HP15_4042 at 4277.815 kb on + strand, within HP15_4042 at 4277.892 kb on + strand, within HP15_4042 at 4277.966 kb on + strand at 4278.084 kb on + strand at 4278.137 kb on - strand, within HP15_4043 at 4278.311 kb on - strand, within HP15_4043 at 4278.345 kb on + strand, within HP15_4043 at 4278.348 kb on - strand, within HP15_4043 at 4278.412 kb on - strand, within HP15_4043 at 4278.591 kb on + strand at 4278.607 kb on - strand at 4278.607 kb on - strand at 4278.628 kb on - strand at 4278.634 kb on + strand at 4278.701 kb on - strand, within HP15_4044 at 4278.701 kb on - strand, within HP15_4044 at 4278.757 kb on + strand, within HP15_4044 at 4278.767 kb on + strand, within HP15_4044 at 4278.811 kb on - strand, within HP15_4044 at 4278.865 kb on + strand, within HP15_4044 at 4278.873 kb on - strand, within HP15_4044 at 4278.873 kb on - strand, within HP15_4044 at 4278.915 kb on + strand, within HP15_4044 at 4278.923 kb on - strand, within HP15_4044 at 4278.923 kb on - strand, within HP15_4044
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic as (N) remove 4,276,309 - -0.0 4,276,397 - HP15_4041 0.16 +1.4 4,276,483 - HP15_4041 0.25 -2.0 4,276,499 + HP15_4041 0.26 +0.7 4,276,555 - HP15_4041 0.32 -0.4 4,276,592 - HP15_4041 0.35 +1.9 4,276,670 + HP15_4041 0.43 +1.6 4,276,678 - HP15_4041 0.44 -0.2 4,276,732 - HP15_4041 0.49 +1.5 4,276,893 + HP15_4041 0.65 +0.2 4,276,963 + HP15_4041 0.71 +0.3 4,276,972 - HP15_4041 0.72 +1.5 4,277,129 + HP15_4041 0.88 +0.2 4,277,251 + -0.2 4,277,259 - -0.2 4,277,292 + +1.2 4,277,302 + +0.1 4,277,313 + -0.5 4,277,315 + -0.2 4,277,315 + +1.0 4,277,315 + +1.8 4,277,323 - -0.2 4,277,345 - HP15_4042 0.13 +1.3 4,277,350 - HP15_4042 0.13 -0.2 4,277,364 + HP15_4042 0.15 +1.6 4,277,410 - HP15_4042 0.22 +1.6 4,277,429 - HP15_4042 0.24 -1.3 4,277,442 + HP15_4042 0.26 -0.5 4,277,491 - HP15_4042 0.33 +0.1 4,277,554 + HP15_4042 0.41 +1.5 4,277,653 - HP15_4042 0.55 -2.5 4,277,667 - HP15_4042 0.57 +1.0 4,277,772 - HP15_4042 0.71 -0.0 4,277,815 + HP15_4042 0.77 +2.0 4,277,892 + HP15_4042 0.88 +0.2 4,277,966 + +2.2 4,278,084 + -0.1 4,278,137 - HP15_4043 0.13 +1.3 4,278,311 - HP15_4043 0.52 +0.1 4,278,345 + HP15_4043 0.60 +0.5 4,278,348 - HP15_4043 0.61 -0.8 4,278,412 - HP15_4043 0.75 -0.0 4,278,591 + +0.4 4,278,607 - +0.3 4,278,607 - -0.0 4,278,628 - +0.6 4,278,634 + -0.5 4,278,701 - HP15_4044 0.15 +1.0 4,278,701 - HP15_4044 0.15 -1.0 4,278,757 + HP15_4044 0.23 -0.3 4,278,767 + HP15_4044 0.25 +1.4 4,278,811 - HP15_4044 0.31 +1.7 4,278,865 + HP15_4044 0.39 +0.8 4,278,873 - HP15_4044 0.40 -0.0 4,278,873 - HP15_4044 0.40 -0.8 4,278,915 + HP15_4044 0.46 +1.2 4,278,923 - HP15_4044 0.47 +0.5 4,278,923 - HP15_4044 0.47 -0.4
Or see this region's nucleotide sequence