Strain Fitness in Marinobacter adhaerens HP15 around HP15_3933

Experiment: L-Glutamic as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3931 and HP15_3932 are separated by 72 nucleotidesHP15_3932 and HP15_3933 are separated by 308 nucleotidesHP15_3933 and HP15_3934 are separated by 81 nucleotides HP15_3931: HP15_3931 - hypothetical protein, at 4,160,177 to 4,160,458 _3931 HP15_3932: HP15_3932 - CBS domain containing protein, at 4,160,531 to 4,161,130 _3932 HP15_3933: HP15_3933 - hypothetical protein, at 4,161,439 to 4,161,600 _3933 HP15_3934: HP15_3934 - acetyl-CoA carboxylase biotin carboxylase subunit, at 4,161,682 to 4,163,103 _3934 Position (kb) 4161 4162Strain fitness (log2 ratio) -2 -1 0 1 2at 4160.461 kb on - strandat 4160.590 kb on - strandat 4160.600 kb on + strand, within HP15_3932at 4160.702 kb on + strand, within HP15_3932at 4160.814 kb on + strand, within HP15_3932at 4160.839 kb on + strand, within HP15_3932at 4160.839 kb on + strand, within HP15_3932at 4160.935 kb on + strand, within HP15_3932at 4161.020 kb on + strand, within HP15_3932at 4161.153 kb on + strandat 4161.272 kb on - strandat 4161.330 kb on - strandat 4161.333 kb on + strandat 4161.460 kb on + strand, within HP15_3933at 4161.462 kb on - strand, within HP15_3933at 4161.508 kb on - strand, within HP15_3933at 4161.539 kb on + strand, within HP15_3933at 4161.739 kb on - strandat 4161.861 kb on + strand, within HP15_3934at 4161.873 kb on - strand, within HP15_3934at 4162.095 kb on + strand, within HP15_3934at 4162.108 kb on - strand, within HP15_3934at 4162.246 kb on + strand, within HP15_3934at 4162.252 kb on + strand, within HP15_3934at 4162.292 kb on - strand, within HP15_3934at 4162.455 kb on + strand, within HP15_3934at 4162.557 kb on + strand, within HP15_3934

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic as (N)
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4,160,461 - -0.4
4,160,590 - -0.3
4,160,600 + HP15_3932 0.12 -0.0
4,160,702 + HP15_3932 0.28 +0.1
4,160,814 + HP15_3932 0.47 -0.6
4,160,839 + HP15_3932 0.51 -2.2
4,160,839 + HP15_3932 0.51 -0.2
4,160,935 + HP15_3932 0.67 -0.6
4,161,020 + HP15_3932 0.81 +1.8
4,161,153 + +0.1
4,161,272 - +1.6
4,161,330 - +1.9
4,161,333 + -0.1
4,161,460 + HP15_3933 0.13 -0.5
4,161,462 - HP15_3933 0.14 +1.8
4,161,508 - HP15_3933 0.43 +0.9
4,161,539 + HP15_3933 0.62 -0.3
4,161,739 - -1.0
4,161,861 + HP15_3934 0.13 +1.4
4,161,873 - HP15_3934 0.13 +1.8
4,162,095 + HP15_3934 0.29 +0.9
4,162,108 - HP15_3934 0.30 +0.5
4,162,246 + HP15_3934 0.40 +1.6
4,162,252 + HP15_3934 0.40 -1.8
4,162,292 - HP15_3934 0.43 -0.0
4,162,455 + HP15_3934 0.54 -0.1
4,162,557 + HP15_3934 0.62 -0.8

Or see this region's nucleotide sequence