Strain Fitness in Marinobacter adhaerens HP15 around HP15_3474

Experiment: L-Glutamic as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3473 and HP15_3474 are separated by 146 nucleotidesHP15_3474 and HP15_3475 are separated by 3 nucleotides HP15_3473: HP15_3473 - type VI secretion system, VCA0110, at 3,661,064 to 3,662,836 _3473 HP15_3474: HP15_3474 - type VI secretion system, lysozyme-related protein, at 3,662,983 to 3,663,423 _3474 HP15_3475: HP15_3475 - protein containing DUF877, at 3,663,427 to 3,664,908 _3475 Position (kb) 3662 3663 3664Strain fitness (log2 ratio) -2 -1 0 1 2at 3662.117 kb on + strand, within HP15_3473at 3662.125 kb on - strand, within HP15_3473at 3662.263 kb on + strand, within HP15_3473at 3662.270 kb on - strand, within HP15_3473at 3662.369 kb on - strand, within HP15_3473at 3662.399 kb on + strand, within HP15_3473at 3662.497 kb on + strand, within HP15_3473at 3662.578 kb on - strand, within HP15_3473at 3662.734 kb on + strandat 3662.742 kb on - strandat 3662.762 kb on - strandat 3662.791 kb on - strandat 3662.946 kb on - strandat 3662.946 kb on - strandat 3662.980 kb on + strandat 3663.092 kb on - strand, within HP15_3474at 3663.093 kb on + strand, within HP15_3474at 3663.129 kb on + strand, within HP15_3474at 3663.137 kb on - strand, within HP15_3474at 3663.137 kb on - strand, within HP15_3474at 3663.207 kb on - strand, within HP15_3474at 3663.332 kb on - strand, within HP15_3474at 3663.396 kb on - strandat 3663.406 kb on + strandat 3663.425 kb on + strandat 3663.425 kb on + strandat 3663.490 kb on + strandat 3663.550 kb on + strandat 3663.558 kb on - strandat 3663.619 kb on - strand, within HP15_3475at 3663.624 kb on - strand, within HP15_3475at 3663.671 kb on + strand, within HP15_3475at 3663.787 kb on + strand, within HP15_3475at 3663.850 kb on + strand, within HP15_3475at 3663.987 kb on - strand, within HP15_3475at 3663.992 kb on - strand, within HP15_3475at 3664.076 kb on + strand, within HP15_3475at 3664.103 kb on - strand, within HP15_3475at 3664.201 kb on + strand, within HP15_3475at 3664.397 kb on + strand, within HP15_3475at 3664.407 kb on + strand, within HP15_3475at 3664.407 kb on + strand, within HP15_3475at 3664.407 kb on + strand, within HP15_3475at 3664.407 kb on + strand, within HP15_3475at 3664.415 kb on - strand, within HP15_3475at 3664.415 kb on - strand, within HP15_3475at 3664.415 kb on - strand, within HP15_3475at 3664.415 kb on - strand, within HP15_3475

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic as (N)
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3,662,117 + HP15_3473 0.59 -0.5
3,662,125 - HP15_3473 0.60 +1.0
3,662,263 + HP15_3473 0.68 +0.0
3,662,270 - HP15_3473 0.68 -0.3
3,662,369 - HP15_3473 0.74 +1.7
3,662,399 + HP15_3473 0.75 +1.4
3,662,497 + HP15_3473 0.81 +0.6
3,662,578 - HP15_3473 0.85 +1.6
3,662,734 + -1.2
3,662,742 - -0.1
3,662,762 - -0.2
3,662,791 - -0.7
3,662,946 - -1.9
3,662,946 - +1.7
3,662,980 + -0.5
3,663,092 - HP15_3474 0.25 +0.0
3,663,093 + HP15_3474 0.25 -0.8
3,663,129 + HP15_3474 0.33 -0.5
3,663,137 - HP15_3474 0.35 -1.5
3,663,137 - HP15_3474 0.35 -0.1
3,663,207 - HP15_3474 0.51 -0.3
3,663,332 - HP15_3474 0.79 +0.8
3,663,396 - -0.7
3,663,406 + -0.2
3,663,425 + +1.7
3,663,425 + -0.3
3,663,490 + -0.4
3,663,550 + +1.6
3,663,558 - +1.7
3,663,619 - HP15_3475 0.13 -0.5
3,663,624 - HP15_3475 0.13 -0.0
3,663,671 + HP15_3475 0.16 -0.6
3,663,787 + HP15_3475 0.24 -0.4
3,663,850 + HP15_3475 0.29 -0.8
3,663,987 - HP15_3475 0.38 -0.5
3,663,992 - HP15_3475 0.38 -0.5
3,664,076 + HP15_3475 0.44 -0.1
3,664,103 - HP15_3475 0.46 -1.2
3,664,201 + HP15_3475 0.52 -0.2
3,664,397 + HP15_3475 0.65 +0.1
3,664,407 + HP15_3475 0.66 +0.4
3,664,407 + HP15_3475 0.66 +1.4
3,664,407 + HP15_3475 0.66 -0.1
3,664,407 + HP15_3475 0.66 +1.3
3,664,415 - HP15_3475 0.67 +1.8
3,664,415 - HP15_3475 0.67 -1.7
3,664,415 - HP15_3475 0.67 +1.5
3,664,415 - HP15_3475 0.67 +1.2

Or see this region's nucleotide sequence