Experiment: L-Glutamic as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3473 and HP15_3474 are separated by 146 nucleotides HP15_3474 and HP15_3475 are separated by 3 nucleotides
HP15_3473: HP15_3473 - type VI secretion system, VCA0110, at 3,661,064 to 3,662,836
_3473
HP15_3474: HP15_3474 - type VI secretion system, lysozyme-related protein, at 3,662,983 to 3,663,423
_3474
HP15_3475: HP15_3475 - protein containing DUF877, at 3,663,427 to 3,664,908
_3475
Position (kb)
3662
3663
3664 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3662.117 kb on + strand, within HP15_3473 at 3662.125 kb on - strand, within HP15_3473 at 3662.263 kb on + strand, within HP15_3473 at 3662.270 kb on - strand, within HP15_3473 at 3662.369 kb on - strand, within HP15_3473 at 3662.399 kb on + strand, within HP15_3473 at 3662.497 kb on + strand, within HP15_3473 at 3662.578 kb on - strand, within HP15_3473 at 3662.734 kb on + strand at 3662.742 kb on - strand at 3662.762 kb on - strand at 3662.791 kb on - strand at 3662.946 kb on - strand at 3662.946 kb on - strand at 3662.980 kb on + strand at 3663.092 kb on - strand, within HP15_3474 at 3663.093 kb on + strand, within HP15_3474 at 3663.129 kb on + strand, within HP15_3474 at 3663.137 kb on - strand, within HP15_3474 at 3663.137 kb on - strand, within HP15_3474 at 3663.207 kb on - strand, within HP15_3474 at 3663.332 kb on - strand, within HP15_3474 at 3663.396 kb on - strand at 3663.406 kb on + strand at 3663.425 kb on + strand at 3663.425 kb on + strand at 3663.490 kb on + strand at 3663.550 kb on + strand at 3663.558 kb on - strand at 3663.619 kb on - strand, within HP15_3475 at 3663.624 kb on - strand, within HP15_3475 at 3663.671 kb on + strand, within HP15_3475 at 3663.787 kb on + strand, within HP15_3475 at 3663.850 kb on + strand, within HP15_3475 at 3663.987 kb on - strand, within HP15_3475 at 3663.992 kb on - strand, within HP15_3475 at 3664.076 kb on + strand, within HP15_3475 at 3664.103 kb on - strand, within HP15_3475 at 3664.201 kb on + strand, within HP15_3475 at 3664.397 kb on + strand, within HP15_3475 at 3664.407 kb on + strand, within HP15_3475 at 3664.407 kb on + strand, within HP15_3475 at 3664.407 kb on + strand, within HP15_3475 at 3664.407 kb on + strand, within HP15_3475 at 3664.415 kb on - strand, within HP15_3475 at 3664.415 kb on - strand, within HP15_3475 at 3664.415 kb on - strand, within HP15_3475 at 3664.415 kb on - strand, within HP15_3475
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic as (N) remove 3,662,117 + HP15_3473 0.59 -0.5 3,662,125 - HP15_3473 0.60 +1.0 3,662,263 + HP15_3473 0.68 +0.0 3,662,270 - HP15_3473 0.68 -0.3 3,662,369 - HP15_3473 0.74 +1.7 3,662,399 + HP15_3473 0.75 +1.4 3,662,497 + HP15_3473 0.81 +0.6 3,662,578 - HP15_3473 0.85 +1.6 3,662,734 + -1.2 3,662,742 - -0.1 3,662,762 - -0.2 3,662,791 - -0.7 3,662,946 - -1.9 3,662,946 - +1.7 3,662,980 + -0.5 3,663,092 - HP15_3474 0.25 +0.0 3,663,093 + HP15_3474 0.25 -0.8 3,663,129 + HP15_3474 0.33 -0.5 3,663,137 - HP15_3474 0.35 -1.5 3,663,137 - HP15_3474 0.35 -0.1 3,663,207 - HP15_3474 0.51 -0.3 3,663,332 - HP15_3474 0.79 +0.8 3,663,396 - -0.7 3,663,406 + -0.2 3,663,425 + +1.7 3,663,425 + -0.3 3,663,490 + -0.4 3,663,550 + +1.6 3,663,558 - +1.7 3,663,619 - HP15_3475 0.13 -0.5 3,663,624 - HP15_3475 0.13 -0.0 3,663,671 + HP15_3475 0.16 -0.6 3,663,787 + HP15_3475 0.24 -0.4 3,663,850 + HP15_3475 0.29 -0.8 3,663,987 - HP15_3475 0.38 -0.5 3,663,992 - HP15_3475 0.38 -0.5 3,664,076 + HP15_3475 0.44 -0.1 3,664,103 - HP15_3475 0.46 -1.2 3,664,201 + HP15_3475 0.52 -0.2 3,664,397 + HP15_3475 0.65 +0.1 3,664,407 + HP15_3475 0.66 +0.4 3,664,407 + HP15_3475 0.66 +1.4 3,664,407 + HP15_3475 0.66 -0.1 3,664,407 + HP15_3475 0.66 +1.3 3,664,415 - HP15_3475 0.67 +1.8 3,664,415 - HP15_3475 0.67 -1.7 3,664,415 - HP15_3475 0.67 +1.5 3,664,415 - HP15_3475 0.67 +1.2
Or see this region's nucleotide sequence