Experiment: L-Glutamic as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3467 and HP15_3468 are separated by 10 nucleotides HP15_3468 and HP15_3469 are separated by 3 nucleotides
HP15_3467: HP15_3467 - type VI secretion ATPase, ClpV1 family, at 3,653,408 to 3,656,041
_3467
HP15_3468: HP15_3468 - protein containing Type IV / VI secretion system, DotU domains, at 3,656,052 to 3,656,879
_3468
HP15_3469: HP15_3469 - protein containing DUF876, bacterial, at 3,656,883 to 3,658,217
_3469
Position (kb)
3656
3657 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3655.071 kb on + strand, within HP15_3467 at 3655.081 kb on + strand, within HP15_3467 at 3655.086 kb on + strand, within HP15_3467 at 3655.096 kb on + strand, within HP15_3467 at 3655.272 kb on + strand, within HP15_3467 at 3655.279 kb on + strand, within HP15_3467 at 3655.280 kb on - strand, within HP15_3467 at 3655.322 kb on + strand, within HP15_3467 at 3655.335 kb on - strand, within HP15_3467 at 3655.360 kb on + strand, within HP15_3467 at 3655.460 kb on - strand, within HP15_3467 at 3655.466 kb on + strand, within HP15_3467 at 3655.466 kb on - strand, within HP15_3467 at 3655.479 kb on - strand, within HP15_3467 at 3655.558 kb on + strand, within HP15_3467 at 3655.558 kb on + strand, within HP15_3467 at 3655.558 kb on + strand, within HP15_3467 at 3655.566 kb on - strand, within HP15_3467 at 3655.566 kb on - strand, within HP15_3467 at 3655.792 kb on + strand at 3655.793 kb on - strand at 3655.860 kb on - strand at 3656.112 kb on + strand at 3656.158 kb on + strand, within HP15_3468 at 3656.171 kb on - strand, within HP15_3468 at 3656.328 kb on + strand, within HP15_3468 at 3656.427 kb on + strand, within HP15_3468 at 3656.452 kb on + strand, within HP15_3468 at 3656.463 kb on + strand, within HP15_3468 at 3656.471 kb on - strand, within HP15_3468 at 3656.471 kb on - strand, within HP15_3468 at 3656.485 kb on - strand, within HP15_3468 at 3656.571 kb on - strand, within HP15_3468 at 3656.574 kb on + strand, within HP15_3468 at 3656.648 kb on - strand, within HP15_3468 at 3656.660 kb on + strand, within HP15_3468 at 3656.721 kb on + strand, within HP15_3468 at 3656.775 kb on + strand, within HP15_3468 at 3656.788 kb on - strand, within HP15_3468 at 3656.844 kb on + strand at 3656.865 kb on - strand at 3656.896 kb on + strand at 3657.014 kb on - strand at 3657.074 kb on + strand, within HP15_3469 at 3657.123 kb on - strand, within HP15_3469 at 3657.211 kb on + strand, within HP15_3469 at 3657.297 kb on - strand, within HP15_3469 at 3657.328 kb on - strand, within HP15_3469 at 3657.386 kb on - strand, within HP15_3469 at 3657.414 kb on - strand, within HP15_3469 at 3657.432 kb on - strand, within HP15_3469 at 3657.434 kb on + strand, within HP15_3469 at 3657.435 kb on + strand, within HP15_3469 at 3657.475 kb on + strand, within HP15_3469 at 3657.483 kb on - strand, within HP15_3469 at 3657.483 kb on - strand, within HP15_3469 at 3657.495 kb on - strand, within HP15_3469 at 3657.655 kb on - strand, within HP15_3469 at 3657.735 kb on + strand, within HP15_3469 at 3657.782 kb on + strand, within HP15_3469 at 3657.854 kb on - strand, within HP15_3469
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic as (N) remove 3,655,071 + HP15_3467 0.63 +2.0 3,655,081 + HP15_3467 0.64 +0.2 3,655,086 + HP15_3467 0.64 -0.5 3,655,096 + HP15_3467 0.64 -0.6 3,655,272 + HP15_3467 0.71 +0.3 3,655,279 + HP15_3467 0.71 +1.1 3,655,280 - HP15_3467 0.71 -0.1 3,655,322 + HP15_3467 0.73 +0.8 3,655,335 - HP15_3467 0.73 -1.8 3,655,360 + HP15_3467 0.74 +2.5 3,655,460 - HP15_3467 0.78 +1.3 3,655,466 + HP15_3467 0.78 -1.3 3,655,466 - HP15_3467 0.78 -0.4 3,655,479 - HP15_3467 0.79 -0.1 3,655,558 + HP15_3467 0.82 -0.3 3,655,558 + HP15_3467 0.82 +1.6 3,655,558 + HP15_3467 0.82 +2.6 3,655,566 - HP15_3467 0.82 +0.9 3,655,566 - HP15_3467 0.82 -0.4 3,655,792 + +1.4 3,655,793 - -0.0 3,655,860 - +1.5 3,656,112 + +1.7 3,656,158 + HP15_3468 0.13 +0.9 3,656,171 - HP15_3468 0.14 +1.5 3,656,328 + HP15_3468 0.33 -0.5 3,656,427 + HP15_3468 0.45 -0.0 3,656,452 + HP15_3468 0.48 +0.6 3,656,463 + HP15_3468 0.50 -0.5 3,656,471 - HP15_3468 0.51 -1.5 3,656,471 - HP15_3468 0.51 -0.5 3,656,485 - HP15_3468 0.52 +0.3 3,656,571 - HP15_3468 0.63 -0.6 3,656,574 + HP15_3468 0.63 +1.6 3,656,648 - HP15_3468 0.72 -0.5 3,656,660 + HP15_3468 0.73 -0.7 3,656,721 + HP15_3468 0.81 -0.5 3,656,775 + HP15_3468 0.87 -1.1 3,656,788 - HP15_3468 0.89 +0.0 3,656,844 + +1.6 3,656,865 - +1.7 3,656,896 + -0.8 3,657,014 - -1.3 3,657,074 + HP15_3469 0.14 -1.0 3,657,123 - HP15_3469 0.18 -0.4 3,657,211 + HP15_3469 0.25 -0.5 3,657,297 - HP15_3469 0.31 +0.0 3,657,328 - HP15_3469 0.33 -1.0 3,657,386 - HP15_3469 0.38 +1.3 3,657,414 - HP15_3469 0.40 -0.3 3,657,432 - HP15_3469 0.41 -0.4 3,657,434 + HP15_3469 0.41 -0.6 3,657,435 + HP15_3469 0.41 -0.2 3,657,475 + HP15_3469 0.44 -0.1 3,657,483 - HP15_3469 0.45 +0.6 3,657,483 - HP15_3469 0.45 -0.0 3,657,495 - HP15_3469 0.46 -1.9 3,657,655 - HP15_3469 0.58 -0.0 3,657,735 + HP15_3469 0.64 +1.7 3,657,782 + HP15_3469 0.67 +0.9 3,657,854 - HP15_3469 0.73 -0.3
Or see this region's nucleotide sequence