Strain Fitness in Marinobacter adhaerens HP15 around HP15_3468

Experiment: L-Glutamic as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3467 and HP15_3468 are separated by 10 nucleotidesHP15_3468 and HP15_3469 are separated by 3 nucleotides HP15_3467: HP15_3467 - type VI secretion ATPase, ClpV1 family, at 3,653,408 to 3,656,041 _3467 HP15_3468: HP15_3468 - protein containing Type IV / VI secretion system, DotU domains, at 3,656,052 to 3,656,879 _3468 HP15_3469: HP15_3469 - protein containing DUF876, bacterial, at 3,656,883 to 3,658,217 _3469 Position (kb) 3656 3657Strain fitness (log2 ratio) -2 -1 0 1 2at 3655.071 kb on + strand, within HP15_3467at 3655.081 kb on + strand, within HP15_3467at 3655.086 kb on + strand, within HP15_3467at 3655.096 kb on + strand, within HP15_3467at 3655.272 kb on + strand, within HP15_3467at 3655.279 kb on + strand, within HP15_3467at 3655.280 kb on - strand, within HP15_3467at 3655.322 kb on + strand, within HP15_3467at 3655.335 kb on - strand, within HP15_3467at 3655.360 kb on + strand, within HP15_3467at 3655.460 kb on - strand, within HP15_3467at 3655.466 kb on + strand, within HP15_3467at 3655.466 kb on - strand, within HP15_3467at 3655.479 kb on - strand, within HP15_3467at 3655.558 kb on + strand, within HP15_3467at 3655.558 kb on + strand, within HP15_3467at 3655.558 kb on + strand, within HP15_3467at 3655.566 kb on - strand, within HP15_3467at 3655.566 kb on - strand, within HP15_3467at 3655.792 kb on + strandat 3655.793 kb on - strandat 3655.860 kb on - strandat 3656.112 kb on + strandat 3656.158 kb on + strand, within HP15_3468at 3656.171 kb on - strand, within HP15_3468at 3656.328 kb on + strand, within HP15_3468at 3656.427 kb on + strand, within HP15_3468at 3656.452 kb on + strand, within HP15_3468at 3656.463 kb on + strand, within HP15_3468at 3656.471 kb on - strand, within HP15_3468at 3656.471 kb on - strand, within HP15_3468at 3656.485 kb on - strand, within HP15_3468at 3656.571 kb on - strand, within HP15_3468at 3656.574 kb on + strand, within HP15_3468at 3656.648 kb on - strand, within HP15_3468at 3656.660 kb on + strand, within HP15_3468at 3656.721 kb on + strand, within HP15_3468at 3656.775 kb on + strand, within HP15_3468at 3656.788 kb on - strand, within HP15_3468at 3656.844 kb on + strandat 3656.865 kb on - strandat 3656.896 kb on + strandat 3657.014 kb on - strandat 3657.074 kb on + strand, within HP15_3469at 3657.123 kb on - strand, within HP15_3469at 3657.211 kb on + strand, within HP15_3469at 3657.297 kb on - strand, within HP15_3469at 3657.328 kb on - strand, within HP15_3469at 3657.386 kb on - strand, within HP15_3469at 3657.414 kb on - strand, within HP15_3469at 3657.432 kb on - strand, within HP15_3469at 3657.434 kb on + strand, within HP15_3469at 3657.435 kb on + strand, within HP15_3469at 3657.475 kb on + strand, within HP15_3469at 3657.483 kb on - strand, within HP15_3469at 3657.483 kb on - strand, within HP15_3469at 3657.495 kb on - strand, within HP15_3469at 3657.655 kb on - strand, within HP15_3469at 3657.735 kb on + strand, within HP15_3469at 3657.782 kb on + strand, within HP15_3469at 3657.854 kb on - strand, within HP15_3469

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic as (N)
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3,655,071 + HP15_3467 0.63 +2.0
3,655,081 + HP15_3467 0.64 +0.2
3,655,086 + HP15_3467 0.64 -0.5
3,655,096 + HP15_3467 0.64 -0.6
3,655,272 + HP15_3467 0.71 +0.3
3,655,279 + HP15_3467 0.71 +1.1
3,655,280 - HP15_3467 0.71 -0.1
3,655,322 + HP15_3467 0.73 +0.8
3,655,335 - HP15_3467 0.73 -1.8
3,655,360 + HP15_3467 0.74 +2.5
3,655,460 - HP15_3467 0.78 +1.3
3,655,466 + HP15_3467 0.78 -1.3
3,655,466 - HP15_3467 0.78 -0.4
3,655,479 - HP15_3467 0.79 -0.1
3,655,558 + HP15_3467 0.82 -0.3
3,655,558 + HP15_3467 0.82 +1.6
3,655,558 + HP15_3467 0.82 +2.6
3,655,566 - HP15_3467 0.82 +0.9
3,655,566 - HP15_3467 0.82 -0.4
3,655,792 + +1.4
3,655,793 - -0.0
3,655,860 - +1.5
3,656,112 + +1.7
3,656,158 + HP15_3468 0.13 +0.9
3,656,171 - HP15_3468 0.14 +1.5
3,656,328 + HP15_3468 0.33 -0.5
3,656,427 + HP15_3468 0.45 -0.0
3,656,452 + HP15_3468 0.48 +0.6
3,656,463 + HP15_3468 0.50 -0.5
3,656,471 - HP15_3468 0.51 -1.5
3,656,471 - HP15_3468 0.51 -0.5
3,656,485 - HP15_3468 0.52 +0.3
3,656,571 - HP15_3468 0.63 -0.6
3,656,574 + HP15_3468 0.63 +1.6
3,656,648 - HP15_3468 0.72 -0.5
3,656,660 + HP15_3468 0.73 -0.7
3,656,721 + HP15_3468 0.81 -0.5
3,656,775 + HP15_3468 0.87 -1.1
3,656,788 - HP15_3468 0.89 +0.0
3,656,844 + +1.6
3,656,865 - +1.7
3,656,896 + -0.8
3,657,014 - -1.3
3,657,074 + HP15_3469 0.14 -1.0
3,657,123 - HP15_3469 0.18 -0.4
3,657,211 + HP15_3469 0.25 -0.5
3,657,297 - HP15_3469 0.31 +0.0
3,657,328 - HP15_3469 0.33 -1.0
3,657,386 - HP15_3469 0.38 +1.3
3,657,414 - HP15_3469 0.40 -0.3
3,657,432 - HP15_3469 0.41 -0.4
3,657,434 + HP15_3469 0.41 -0.6
3,657,435 + HP15_3469 0.41 -0.2
3,657,475 + HP15_3469 0.44 -0.1
3,657,483 - HP15_3469 0.45 +0.6
3,657,483 - HP15_3469 0.45 -0.0
3,657,495 - HP15_3469 0.46 -1.9
3,657,655 - HP15_3469 0.58 -0.0
3,657,735 + HP15_3469 0.64 +1.7
3,657,782 + HP15_3469 0.67 +0.9
3,657,854 - HP15_3469 0.73 -0.3

Or see this region's nucleotide sequence