Strain Fitness in Marinobacter adhaerens HP15 around HP15_3024

Experiment: L-Glutamic as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3023 and HP15_3024 overlap by 8 nucleotidesHP15_3024 and HP15_3025 are separated by 39 nucleotidesHP15_3025 and HP15_3026 are separated by 22 nucleotides HP15_3023: HP15_3023 - glycolate oxidase FAD binding subunit, at 3,167,031 to 3,168,098 _3023 HP15_3024: HP15_3024 - FAD linked oxidase domain protein, at 3,168,091 to 3,169,563 _3024 HP15_3025: HP15_3025 - glcG protein, at 3,169,603 to 3,170,028 _3025 HP15_3026: HP15_3026 - TRAP dicarboxylate transporter, DctM subunit, at 3,170,051 to 3,171,550 _3026 Position (kb) 3168 3169 3170Strain fitness (log2 ratio) -2 -1 0 1 2at 3167.109 kb on + strandat 3167.175 kb on - strand, within HP15_3023at 3167.180 kb on - strand, within HP15_3023at 3167.324 kb on - strand, within HP15_3023at 3167.412 kb on + strand, within HP15_3023at 3167.456 kb on - strand, within HP15_3023at 3167.456 kb on - strand, within HP15_3023at 3167.562 kb on - strand, within HP15_3023at 3167.562 kb on - strand, within HP15_3023at 3167.648 kb on - strand, within HP15_3023at 3167.657 kb on + strand, within HP15_3023at 3167.657 kb on + strand, within HP15_3023at 3167.716 kb on + strand, within HP15_3023at 3167.786 kb on + strand, within HP15_3023at 3167.806 kb on - strand, within HP15_3023at 3167.978 kb on - strand, within HP15_3023at 3168.251 kb on + strand, within HP15_3024at 3168.259 kb on - strand, within HP15_3024at 3168.288 kb on + strand, within HP15_3024at 3168.324 kb on + strand, within HP15_3024at 3168.391 kb on - strand, within HP15_3024at 3168.395 kb on - strand, within HP15_3024at 3168.465 kb on + strand, within HP15_3024at 3168.473 kb on - strand, within HP15_3024at 3168.516 kb on + strand, within HP15_3024at 3168.524 kb on - strand, within HP15_3024at 3168.587 kb on + strand, within HP15_3024at 3168.725 kb on + strand, within HP15_3024at 3168.825 kb on + strand, within HP15_3024at 3168.872 kb on - strand, within HP15_3024at 3168.948 kb on + strand, within HP15_3024at 3168.948 kb on + strand, within HP15_3024at 3168.969 kb on - strand, within HP15_3024at 3168.996 kb on + strand, within HP15_3024at 3169.020 kb on - strand, within HP15_3024at 3169.065 kb on - strand, within HP15_3024at 3169.149 kb on + strand, within HP15_3024at 3169.166 kb on + strand, within HP15_3024at 3169.179 kb on - strand, within HP15_3024at 3169.209 kb on + strand, within HP15_3024at 3169.289 kb on - strand, within HP15_3024at 3169.328 kb on - strand, within HP15_3024at 3169.347 kb on - strand, within HP15_3024at 3169.392 kb on + strand, within HP15_3024at 3169.400 kb on - strand, within HP15_3024at 3169.599 kb on + strandat 3169.599 kb on - strandat 3169.626 kb on + strandat 3169.690 kb on + strand, within HP15_3025at 3169.797 kb on + strand, within HP15_3025at 3169.801 kb on + strand, within HP15_3025at 3169.814 kb on - strand, within HP15_3025at 3169.844 kb on + strand, within HP15_3025at 3169.936 kb on + strand, within HP15_3025at 3170.012 kb on - strandat 3170.055 kb on + strandat 3170.103 kb on + strandat 3170.103 kb on + strandat 3170.103 kb on + strandat 3170.105 kb on + strandat 3170.111 kb on - strandat 3170.111 kb on - strandat 3170.146 kb on - strandat 3170.156 kb on - strandat 3170.195 kb on + strandat 3170.204 kb on - strand, within HP15_3026at 3170.263 kb on - strand, within HP15_3026at 3170.268 kb on + strand, within HP15_3026at 3170.271 kb on - strand, within HP15_3026at 3170.273 kb on + strand, within HP15_3026at 3170.368 kb on + strand, within HP15_3026at 3170.382 kb on - strand, within HP15_3026at 3170.399 kb on - strand, within HP15_3026at 3170.415 kb on + strand, within HP15_3026at 3170.426 kb on + strand, within HP15_3026at 3170.498 kb on - strand, within HP15_3026at 3170.518 kb on - strand, within HP15_3026at 3170.557 kb on - strand, within HP15_3026

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic as (N)
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3,167,109 + -1.5
3,167,175 - HP15_3023 0.13 -0.4
3,167,180 - HP15_3023 0.14 -0.1
3,167,324 - HP15_3023 0.27 -0.6
3,167,412 + HP15_3023 0.36 +1.1
3,167,456 - HP15_3023 0.40 +1.2
3,167,456 - HP15_3023 0.40 +0.2
3,167,562 - HP15_3023 0.50 -0.2
3,167,562 - HP15_3023 0.50 +1.2
3,167,648 - HP15_3023 0.58 +0.5
3,167,657 + HP15_3023 0.59 +1.7
3,167,657 + HP15_3023 0.59 -0.1
3,167,716 + HP15_3023 0.64 +0.5
3,167,786 + HP15_3023 0.71 -1.1
3,167,806 - HP15_3023 0.73 -0.5
3,167,978 - HP15_3023 0.89 -1.5
3,168,251 + HP15_3024 0.11 -2.1
3,168,259 - HP15_3024 0.11 +0.7
3,168,288 + HP15_3024 0.13 -0.7
3,168,324 + HP15_3024 0.16 -1.2
3,168,391 - HP15_3024 0.20 -0.3
3,168,395 - HP15_3024 0.21 -1.2
3,168,465 + HP15_3024 0.25 +0.2
3,168,473 - HP15_3024 0.26 -0.3
3,168,516 + HP15_3024 0.29 +0.5
3,168,524 - HP15_3024 0.29 +0.5
3,168,587 + HP15_3024 0.34 +0.2
3,168,725 + HP15_3024 0.43 -1.0
3,168,825 + HP15_3024 0.50 -0.3
3,168,872 - HP15_3024 0.53 -0.6
3,168,948 + HP15_3024 0.58 -1.0
3,168,948 + HP15_3024 0.58 +0.5
3,168,969 - HP15_3024 0.60 +0.7
3,168,996 + HP15_3024 0.61 +0.5
3,169,020 - HP15_3024 0.63 -0.8
3,169,065 - HP15_3024 0.66 -1.3
3,169,149 + HP15_3024 0.72 -0.6
3,169,166 + HP15_3024 0.73 -0.5
3,169,179 - HP15_3024 0.74 -0.6
3,169,209 + HP15_3024 0.76 -1.2
3,169,289 - HP15_3024 0.81 -0.2
3,169,328 - HP15_3024 0.84 -0.2
3,169,347 - HP15_3024 0.85 -0.2
3,169,392 + HP15_3024 0.88 +0.4
3,169,400 - HP15_3024 0.89 -1.0
3,169,599 + -0.2
3,169,599 - +1.7
3,169,626 + +1.6
3,169,690 + HP15_3025 0.20 +1.7
3,169,797 + HP15_3025 0.46 -0.6
3,169,801 + HP15_3025 0.46 -0.1
3,169,814 - HP15_3025 0.50 -0.0
3,169,844 + HP15_3025 0.57 +1.3
3,169,936 + HP15_3025 0.78 -0.5
3,170,012 - -0.1
3,170,055 + +1.3
3,170,103 + +0.4
3,170,103 + +1.6
3,170,103 + +1.5
3,170,105 + +2.5
3,170,111 - -0.5
3,170,111 - -0.1
3,170,146 - +1.9
3,170,156 - -0.6
3,170,195 + -0.9
3,170,204 - HP15_3026 0.10 -0.1
3,170,263 - HP15_3026 0.14 +1.9
3,170,268 + HP15_3026 0.14 +1.3
3,170,271 - HP15_3026 0.15 -0.3
3,170,273 + HP15_3026 0.15 +1.1
3,170,368 + HP15_3026 0.21 -0.4
3,170,382 - HP15_3026 0.22 -0.8
3,170,399 - HP15_3026 0.23 -0.0
3,170,415 + HP15_3026 0.24 +1.5
3,170,426 + HP15_3026 0.25 -0.2
3,170,498 - HP15_3026 0.30 +0.9
3,170,518 - HP15_3026 0.31 -1.1
3,170,557 - HP15_3026 0.34 -0.2

Or see this region's nucleotide sequence