Strain Fitness in Marinobacter adhaerens HP15 around HP15_2834

Experiment: L-Glutamic as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2832 and HP15_2833 are separated by 390 nucleotidesHP15_2833 and HP15_2834 are separated by 27 nucleotidesHP15_2834 and HP15_2835 are separated by 282 nucleotidesHP15_2835 and HP15_2836 are separated by 91 nucleotides HP15_2832: HP15_2832 - DNA damage response helicase (yejH or radD) (from data), at 2,974,962 to 2,976,719 _2832 HP15_2833: HP15_2833 - conserved hypothetical protein, at 2,977,110 to 2,977,334 _2833 HP15_2834: HP15_2834 - OmpA/MotB domain protein, at 2,977,362 to 2,978,171 _2834 HP15_2835: HP15_2835 - cold shock, CspA, at 2,978,454 to 2,978,660 _2835 HP15_2836: HP15_2836 - conserved hypothetical protein, membrane, at 2,978,752 to 2,979,126 _2836 Position (kb) 2977 2978 2979Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 2976.405 kb on - strand, within HP15_2832at 2976.514 kb on + strand, within HP15_2832at 2976.745 kb on - strandat 2977.024 kb on + strandat 2977.029 kb on - strandat 2977.032 kb on - strandat 2977.130 kb on + strandat 2977.238 kb on - strand, within HP15_2833at 2977.270 kb on - strand, within HP15_2833at 2977.271 kb on + strand, within HP15_2833at 2977.329 kb on + strandat 2977.392 kb on + strandat 2977.459 kb on + strand, within HP15_2834at 2977.459 kb on + strand, within HP15_2834at 2977.644 kb on - strand, within HP15_2834at 2977.644 kb on - strand, within HP15_2834at 2977.681 kb on - strand, within HP15_2834at 2977.701 kb on + strand, within HP15_2834at 2977.728 kb on - strand, within HP15_2834at 2977.728 kb on - strand, within HP15_2834at 2977.730 kb on + strand, within HP15_2834at 2977.730 kb on + strand, within HP15_2834at 2977.730 kb on + strand, within HP15_2834at 2977.730 kb on + strand, within HP15_2834at 2977.738 kb on - strand, within HP15_2834at 2977.738 kb on - strand, within HP15_2834at 2977.738 kb on - strand, within HP15_2834at 2977.738 kb on - strand, within HP15_2834at 2977.738 kb on - strand, within HP15_2834at 2977.787 kb on + strand, within HP15_2834at 2977.794 kb on - strand, within HP15_2834at 2977.807 kb on + strand, within HP15_2834at 2977.812 kb on + strand, within HP15_2834at 2977.849 kb on + strand, within HP15_2834at 2977.856 kb on + strand, within HP15_2834at 2977.864 kb on - strand, within HP15_2834at 2977.945 kb on - strand, within HP15_2834at 2977.949 kb on + strand, within HP15_2834at 2977.980 kb on - strand, within HP15_2834at 2977.988 kb on + strand, within HP15_2834at 2978.002 kb on - strand, within HP15_2834at 2978.010 kb on - strand, within HP15_2834at 2978.039 kb on + strand, within HP15_2834at 2978.184 kb on + strandat 2978.186 kb on - strandat 2978.287 kb on - strandat 2978.287 kb on - strandat 2978.296 kb on + strandat 2978.325 kb on - strandat 2978.525 kb on - strand, within HP15_2835at 2978.525 kb on - strand, within HP15_2835at 2978.555 kb on + strand, within HP15_2835at 2978.597 kb on - strand, within HP15_2835at 2978.665 kb on - strandat 2978.691 kb on + strandat 2978.699 kb on - strandat 2978.700 kb on - strandat 2978.700 kb on - strandat 2978.758 kb on - strandat 2978.758 kb on - strandat 2978.859 kb on + strand, within HP15_2836at 2978.867 kb on - strand, within HP15_2836at 2978.883 kb on - strand, within HP15_2836at 2978.962 kb on + strand, within HP15_2836at 2978.994 kb on - strand, within HP15_2836

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic as (N)
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2,976,405 - HP15_2832 0.82 -0.2
2,976,514 + HP15_2832 0.88 +1.5
2,976,745 - -0.8
2,977,024 + +1.8
2,977,029 - +2.1
2,977,032 - -0.3
2,977,130 + -0.8
2,977,238 - HP15_2833 0.57 +1.0
2,977,270 - HP15_2833 0.71 +1.4
2,977,271 + HP15_2833 0.72 -0.8
2,977,329 + +5.6
2,977,392 + +1.4
2,977,459 + HP15_2834 0.12 -1.8
2,977,459 + HP15_2834 0.12 -0.4
2,977,644 - HP15_2834 0.35 +1.7
2,977,644 - HP15_2834 0.35 +0.0
2,977,681 - HP15_2834 0.39 +1.3
2,977,701 + HP15_2834 0.42 +0.4
2,977,728 - HP15_2834 0.45 +0.2
2,977,728 - HP15_2834 0.45 +0.5
2,977,730 + HP15_2834 0.45 +1.3
2,977,730 + HP15_2834 0.45 +0.6
2,977,730 + HP15_2834 0.45 +1.8
2,977,730 + HP15_2834 0.45 +0.2
2,977,738 - HP15_2834 0.46 -0.3
2,977,738 - HP15_2834 0.46 +1.6
2,977,738 - HP15_2834 0.46 -0.2
2,977,738 - HP15_2834 0.46 -0.5
2,977,738 - HP15_2834 0.46 +2.0
2,977,787 + HP15_2834 0.52 -1.3
2,977,794 - HP15_2834 0.53 -0.1
2,977,807 + HP15_2834 0.55 -0.1
2,977,812 + HP15_2834 0.56 +1.6
2,977,849 + HP15_2834 0.60 -0.3
2,977,856 + HP15_2834 0.61 +0.3
2,977,864 - HP15_2834 0.62 +1.9
2,977,945 - HP15_2834 0.72 -0.1
2,977,949 + HP15_2834 0.72 -0.0
2,977,980 - HP15_2834 0.76 +2.0
2,977,988 + HP15_2834 0.77 +0.7
2,978,002 - HP15_2834 0.79 +0.8
2,978,010 - HP15_2834 0.80 -0.7
2,978,039 + HP15_2834 0.84 +1.8
2,978,184 + -0.5
2,978,186 - -0.2
2,978,287 - +2.5
2,978,287 - -0.4
2,978,296 + +0.1
2,978,325 - +0.9
2,978,525 - HP15_2835 0.34 +1.3
2,978,525 - HP15_2835 0.34 +0.0
2,978,555 + HP15_2835 0.49 +1.3
2,978,597 - HP15_2835 0.69 +1.0
2,978,665 - +0.0
2,978,691 + +0.5
2,978,699 - -0.3
2,978,700 - -0.6
2,978,700 - +0.4
2,978,758 - +1.6
2,978,758 - -0.1
2,978,859 + HP15_2836 0.29 +1.4
2,978,867 - HP15_2836 0.31 +0.6
2,978,883 - HP15_2836 0.35 +1.5
2,978,962 + HP15_2836 0.56 +0.3
2,978,994 - HP15_2836 0.65 -0.6

Or see this region's nucleotide sequence