Strain Fitness in Marinobacter adhaerens HP15 around HP15_2557

Experiment: L-Glutamic as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2556 and HP15_2557 are separated by 94 nucleotidesHP15_2557 and HP15_2558 overlap by 23 nucleotidesHP15_2558 and HP15_2559 are separated by 13 nucleotides HP15_2556: HP15_2556 - lysophospholipase, at 2,702,682 to 2,703,689 _2556 HP15_2557: HP15_2557 - alpha/beta hydrolase fold-3 domain protein, at 2,703,784 to 2,704,677 _2557 HP15_2558: HP15_2558 - putative nuclease, at 2,704,655 to 2,704,909 _2558 HP15_2559: HP15_2559 - membrane protein containing DUF6, transmembrane, at 2,704,923 to 2,705,828 _2559 Position (kb) 2703 2704 2705Strain fitness (log2 ratio) -1 0 1 2at 2702.862 kb on - strand, within HP15_2556at 2702.862 kb on - strand, within HP15_2556at 2702.871 kb on - strand, within HP15_2556at 2702.908 kb on + strand, within HP15_2556at 2702.921 kb on - strand, within HP15_2556at 2702.962 kb on + strand, within HP15_2556at 2703.018 kb on + strand, within HP15_2556at 2703.024 kb on - strand, within HP15_2556at 2703.035 kb on + strand, within HP15_2556at 2703.075 kb on - strand, within HP15_2556at 2703.207 kb on + strand, within HP15_2556at 2703.215 kb on - strand, within HP15_2556at 2703.241 kb on + strand, within HP15_2556at 2703.331 kb on - strand, within HP15_2556at 2703.434 kb on - strand, within HP15_2556at 2703.444 kb on - strand, within HP15_2556at 2703.454 kb on - strand, within HP15_2556at 2703.454 kb on - strand, within HP15_2556at 2703.499 kb on + strand, within HP15_2556at 2703.513 kb on - strand, within HP15_2556at 2703.620 kb on - strandat 2703.630 kb on + strandat 2703.633 kb on - strandat 2703.638 kb on - strandat 2703.703 kb on - strandat 2703.732 kb on + strandat 2703.738 kb on + strandat 2703.760 kb on + strandat 2703.778 kb on + strandat 2703.804 kb on - strandat 2703.834 kb on + strandat 2703.847 kb on - strandat 2703.905 kb on + strand, within HP15_2557at 2703.913 kb on + strand, within HP15_2557at 2703.923 kb on - strand, within HP15_2557at 2704.021 kb on + strand, within HP15_2557at 2704.050 kb on - strand, within HP15_2557at 2704.313 kb on + strand, within HP15_2557at 2704.313 kb on + strand, within HP15_2557at 2704.313 kb on + strand, within HP15_2557at 2704.321 kb on - strand, within HP15_2557at 2704.321 kb on - strand, within HP15_2557at 2704.462 kb on + strand, within HP15_2557at 2704.472 kb on + strand, within HP15_2557at 2704.484 kb on - strand, within HP15_2557at 2704.560 kb on + strand, within HP15_2557at 2704.567 kb on + strand, within HP15_2557at 2704.691 kb on - strand, within HP15_2558at 2704.691 kb on - strand, within HP15_2558at 2704.701 kb on + strand, within HP15_2558at 2704.939 kb on - strandat 2705.024 kb on - strand, within HP15_2559at 2705.029 kb on - strand, within HP15_2559at 2705.034 kb on - strand, within HP15_2559at 2705.086 kb on + strand, within HP15_2559at 2705.162 kb on + strand, within HP15_2559at 2705.306 kb on + strand, within HP15_2559at 2705.323 kb on + strand, within HP15_2559at 2705.351 kb on + strand, within HP15_2559at 2705.390 kb on - strand, within HP15_2559at 2705.430 kb on + strand, within HP15_2559at 2705.493 kb on + strand, within HP15_2559at 2705.512 kb on + strand, within HP15_2559at 2705.587 kb on + strand, within HP15_2559at 2705.668 kb on - strand, within HP15_2559

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic as (N)
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2,702,862 - HP15_2556 0.18 -0.4
2,702,862 - HP15_2556 0.18 +1.4
2,702,871 - HP15_2556 0.19 -1.7
2,702,908 + HP15_2556 0.22 +1.1
2,702,921 - HP15_2556 0.24 +1.1
2,702,962 + HP15_2556 0.28 -0.2
2,703,018 + HP15_2556 0.33 -1.5
2,703,024 - HP15_2556 0.34 -0.4
2,703,035 + HP15_2556 0.35 -0.7
2,703,075 - HP15_2556 0.39 +1.9
2,703,207 + HP15_2556 0.52 +1.6
2,703,215 - HP15_2556 0.53 -0.9
2,703,241 + HP15_2556 0.55 +1.1
2,703,331 - HP15_2556 0.64 -0.2
2,703,434 - HP15_2556 0.75 +1.2
2,703,444 - HP15_2556 0.76 +1.1
2,703,454 - HP15_2556 0.77 -0.2
2,703,454 - HP15_2556 0.77 -0.0
2,703,499 + HP15_2556 0.81 -0.5
2,703,513 - HP15_2556 0.82 -0.0
2,703,620 - -0.5
2,703,630 + +0.2
2,703,633 - -1.3
2,703,638 - -0.4
2,703,703 - +0.3
2,703,732 + +2.2
2,703,738 + +1.2
2,703,760 + -0.2
2,703,778 + +1.4
2,703,804 - -0.1
2,703,834 + +0.1
2,703,847 - +0.2
2,703,905 + HP15_2557 0.14 -0.8
2,703,913 + HP15_2557 0.14 -0.2
2,703,923 - HP15_2557 0.16 +1.5
2,704,021 + HP15_2557 0.27 -0.7
2,704,050 - HP15_2557 0.30 +0.6
2,704,313 + HP15_2557 0.59 +0.4
2,704,313 + HP15_2557 0.59 -0.5
2,704,313 + HP15_2557 0.59 -0.2
2,704,321 - HP15_2557 0.60 -0.0
2,704,321 - HP15_2557 0.60 -0.5
2,704,462 + HP15_2557 0.76 +0.3
2,704,472 + HP15_2557 0.77 -0.7
2,704,484 - HP15_2557 0.78 -0.3
2,704,560 + HP15_2557 0.87 -0.6
2,704,567 + HP15_2557 0.88 -0.7
2,704,691 - HP15_2558 0.14 -1.4
2,704,691 - HP15_2558 0.14 +1.5
2,704,701 + HP15_2558 0.18 -0.5
2,704,939 - -0.4
2,705,024 - HP15_2559 0.11 +1.1
2,705,029 - HP15_2559 0.12 +1.1
2,705,034 - HP15_2559 0.12 +1.1
2,705,086 + HP15_2559 0.18 +0.1
2,705,162 + HP15_2559 0.26 +1.6
2,705,306 + HP15_2559 0.42 +2.0
2,705,323 + HP15_2559 0.44 +1.8
2,705,351 + HP15_2559 0.47 +0.3
2,705,390 - HP15_2559 0.52 -0.1
2,705,430 + HP15_2559 0.56 -0.4
2,705,493 + HP15_2559 0.63 -0.3
2,705,512 + HP15_2559 0.65 -1.5
2,705,587 + HP15_2559 0.73 -0.5
2,705,668 - HP15_2559 0.82 +1.0

Or see this region's nucleotide sequence