Strain Fitness in Marinobacter adhaerens HP15 around HP15_2545

Experiment: L-Glutamic as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2544 and HP15_2545 are separated by 210 nucleotidesHP15_2545 and HP15_2546 are separated by 146 nucleotidesHP15_2546 and HP15_2547 are separated by 202 nucleotides HP15_2544: HP15_2544 - acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 2,689,754 to 2,691,635 _2544 HP15_2545: HP15_2545 - oxidoreductase, zinc-binding dehydrogenase family protein, at 2,691,846 to 2,692,826 _2545 HP15_2546: HP15_2546 - BLUF domain protein, at 2,692,973 to 2,693,530 _2546 HP15_2547: HP15_2547 - membrane protein containing uncharacterized protein family UPF0126 domains, at 2,693,733 to 2,694,350 _2547 Position (kb) 2691 2692 2693Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2690.872 kb on + strand, within HP15_2544at 2691.025 kb on + strand, within HP15_2544at 2691.025 kb on + strand, within HP15_2544at 2691.148 kb on - strand, within HP15_2544at 2691.160 kb on - strand, within HP15_2544at 2691.192 kb on + strand, within HP15_2544at 2691.280 kb on + strand, within HP15_2544at 2691.288 kb on - strand, within HP15_2544at 2691.313 kb on - strand, within HP15_2544at 2691.331 kb on + strand, within HP15_2544at 2691.363 kb on - strand, within HP15_2544at 2691.436 kb on - strand, within HP15_2544at 2691.484 kb on + strandat 2691.554 kb on - strandat 2691.573 kb on + strandat 2691.573 kb on - strandat 2691.574 kb on + strandat 2691.574 kb on + strandat 2691.660 kb on + strandat 2691.660 kb on + strandat 2691.668 kb on - strandat 2691.775 kb on + strandat 2691.814 kb on - strandat 2691.819 kb on + strandat 2691.827 kb on - strandat 2691.845 kb on + strandat 2691.914 kb on - strandat 2691.935 kb on - strandat 2691.935 kb on - strandat 2691.937 kb on + strandat 2691.945 kb on - strand, within HP15_2545at 2691.945 kb on - strand, within HP15_2545at 2691.967 kb on + strand, within HP15_2545at 2691.975 kb on - strand, within HP15_2545at 2692.204 kb on + strand, within HP15_2545at 2692.229 kb on - strand, within HP15_2545at 2692.265 kb on + strand, within HP15_2545at 2692.344 kb on - strand, within HP15_2545at 2692.350 kb on - strand, within HP15_2545at 2692.419 kb on - strand, within HP15_2545at 2692.430 kb on + strand, within HP15_2545at 2692.430 kb on + strand, within HP15_2545at 2692.430 kb on + strand, within HP15_2545at 2692.430 kb on + strand, within HP15_2545at 2692.438 kb on - strand, within HP15_2545at 2692.438 kb on - strand, within HP15_2545at 2692.472 kb on - strand, within HP15_2545at 2692.558 kb on + strand, within HP15_2545at 2692.819 kb on + strandat 2692.883 kb on + strandat 2692.976 kb on + strandat 2692.979 kb on - strandat 2693.056 kb on + strand, within HP15_2546at 2693.155 kb on + strand, within HP15_2546at 2693.155 kb on + strand, within HP15_2546at 2693.162 kb on + strand, within HP15_2546at 2693.163 kb on - strand, within HP15_2546at 2693.163 kb on - strand, within HP15_2546at 2693.163 kb on - strand, within HP15_2546at 2693.163 kb on - strand, within HP15_2546at 2693.163 kb on - strand, within HP15_2546at 2693.163 kb on - strand, within HP15_2546at 2693.184 kb on - strand, within HP15_2546at 2693.527 kb on - strandat 2693.544 kb on + strandat 2693.628 kb on + strandat 2693.708 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic as (N)
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2,690,872 + HP15_2544 0.59 +1.7
2,691,025 + HP15_2544 0.68 -1.5
2,691,025 + HP15_2544 0.68 -0.8
2,691,148 - HP15_2544 0.74 +0.8
2,691,160 - HP15_2544 0.75 -1.1
2,691,192 + HP15_2544 0.76 +1.3
2,691,280 + HP15_2544 0.81 +1.4
2,691,288 - HP15_2544 0.82 +1.2
2,691,313 - HP15_2544 0.83 +1.4
2,691,331 + HP15_2544 0.84 +0.0
2,691,363 - HP15_2544 0.85 +0.6
2,691,436 - HP15_2544 0.89 +1.0
2,691,484 + +0.4
2,691,554 - -0.0
2,691,573 + +1.9
2,691,573 - +0.5
2,691,574 + -0.2
2,691,574 + -0.1
2,691,660 + +1.6
2,691,660 + -0.6
2,691,668 - -0.8
2,691,775 + -0.5
2,691,814 - -0.5
2,691,819 + -0.3
2,691,827 - -1.1
2,691,845 + -0.5
2,691,914 - +0.7
2,691,935 - -3.0
2,691,935 - +0.3
2,691,937 + -0.0
2,691,945 - HP15_2545 0.10 +1.3
2,691,945 - HP15_2545 0.10 +2.0
2,691,967 + HP15_2545 0.12 +0.2
2,691,975 - HP15_2545 0.13 +1.8
2,692,204 + HP15_2545 0.36 +1.8
2,692,229 - HP15_2545 0.39 -0.5
2,692,265 + HP15_2545 0.43 -0.2
2,692,344 - HP15_2545 0.51 -0.2
2,692,350 - HP15_2545 0.51 +1.3
2,692,419 - HP15_2545 0.58 -0.3
2,692,430 + HP15_2545 0.60 -0.8
2,692,430 + HP15_2545 0.60 -0.4
2,692,430 + HP15_2545 0.60 -0.6
2,692,430 + HP15_2545 0.60 +2.1
2,692,438 - HP15_2545 0.60 +1.6
2,692,438 - HP15_2545 0.60 -0.5
2,692,472 - HP15_2545 0.64 -0.5
2,692,558 + HP15_2545 0.73 +1.2
2,692,819 + +0.3
2,692,883 + -0.5
2,692,976 + -1.0
2,692,979 - -0.1
2,693,056 + HP15_2546 0.15 -0.5
2,693,155 + HP15_2546 0.33 -0.4
2,693,155 + HP15_2546 0.33 -1.4
2,693,162 + HP15_2546 0.34 -0.1
2,693,163 - HP15_2546 0.34 +0.4
2,693,163 - HP15_2546 0.34 -0.5
2,693,163 - HP15_2546 0.34 +1.3
2,693,163 - HP15_2546 0.34 +0.7
2,693,163 - HP15_2546 0.34 +0.1
2,693,163 - HP15_2546 0.34 -0.2
2,693,184 - HP15_2546 0.38 +1.7
2,693,527 - -0.3
2,693,544 + -0.9
2,693,628 + -0.3
2,693,708 + +1.8

Or see this region's nucleotide sequence