Experiment: L-Glutamic as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2544 and HP15_2545 are separated by 210 nucleotides HP15_2545 and HP15_2546 are separated by 146 nucleotides HP15_2546 and HP15_2547 are separated by 202 nucleotides
HP15_2544: HP15_2544 - acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 2,689,754 to 2,691,635
_2544
HP15_2545: HP15_2545 - oxidoreductase, zinc-binding dehydrogenase family protein, at 2,691,846 to 2,692,826
_2545
HP15_2546: HP15_2546 - BLUF domain protein, at 2,692,973 to 2,693,530
_2546
HP15_2547: HP15_2547 - membrane protein containing uncharacterized protein family UPF0126 domains, at 2,693,733 to 2,694,350
_2547
Position (kb)
2691
2692
2693 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2690.872 kb on + strand, within HP15_2544 at 2691.025 kb on + strand, within HP15_2544 at 2691.025 kb on + strand, within HP15_2544 at 2691.148 kb on - strand, within HP15_2544 at 2691.160 kb on - strand, within HP15_2544 at 2691.192 kb on + strand, within HP15_2544 at 2691.280 kb on + strand, within HP15_2544 at 2691.288 kb on - strand, within HP15_2544 at 2691.313 kb on - strand, within HP15_2544 at 2691.331 kb on + strand, within HP15_2544 at 2691.363 kb on - strand, within HP15_2544 at 2691.436 kb on - strand, within HP15_2544 at 2691.484 kb on + strand at 2691.554 kb on - strand at 2691.573 kb on + strand at 2691.573 kb on - strand at 2691.574 kb on + strand at 2691.574 kb on + strand at 2691.660 kb on + strand at 2691.660 kb on + strand at 2691.668 kb on - strand at 2691.775 kb on + strand at 2691.814 kb on - strand at 2691.819 kb on + strand at 2691.827 kb on - strand at 2691.845 kb on + strand at 2691.914 kb on - strand at 2691.935 kb on - strand at 2691.935 kb on - strand at 2691.937 kb on + strand at 2691.945 kb on - strand, within HP15_2545 at 2691.945 kb on - strand, within HP15_2545 at 2691.967 kb on + strand, within HP15_2545 at 2691.975 kb on - strand, within HP15_2545 at 2692.204 kb on + strand, within HP15_2545 at 2692.229 kb on - strand, within HP15_2545 at 2692.265 kb on + strand, within HP15_2545 at 2692.344 kb on - strand, within HP15_2545 at 2692.350 kb on - strand, within HP15_2545 at 2692.419 kb on - strand, within HP15_2545 at 2692.430 kb on + strand, within HP15_2545 at 2692.430 kb on + strand, within HP15_2545 at 2692.430 kb on + strand, within HP15_2545 at 2692.430 kb on + strand, within HP15_2545 at 2692.438 kb on - strand, within HP15_2545 at 2692.438 kb on - strand, within HP15_2545 at 2692.472 kb on - strand, within HP15_2545 at 2692.558 kb on + strand, within HP15_2545 at 2692.819 kb on + strand at 2692.883 kb on + strand at 2692.976 kb on + strand at 2692.979 kb on - strand at 2693.056 kb on + strand, within HP15_2546 at 2693.155 kb on + strand, within HP15_2546 at 2693.155 kb on + strand, within HP15_2546 at 2693.162 kb on + strand, within HP15_2546 at 2693.163 kb on - strand, within HP15_2546 at 2693.163 kb on - strand, within HP15_2546 at 2693.163 kb on - strand, within HP15_2546 at 2693.163 kb on - strand, within HP15_2546 at 2693.163 kb on - strand, within HP15_2546 at 2693.163 kb on - strand, within HP15_2546 at 2693.184 kb on - strand, within HP15_2546 at 2693.527 kb on - strand at 2693.544 kb on + strand at 2693.628 kb on + strand at 2693.708 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic as (N) remove 2,690,872 + HP15_2544 0.59 +1.7 2,691,025 + HP15_2544 0.68 -1.5 2,691,025 + HP15_2544 0.68 -0.8 2,691,148 - HP15_2544 0.74 +0.8 2,691,160 - HP15_2544 0.75 -1.1 2,691,192 + HP15_2544 0.76 +1.3 2,691,280 + HP15_2544 0.81 +1.4 2,691,288 - HP15_2544 0.82 +1.2 2,691,313 - HP15_2544 0.83 +1.4 2,691,331 + HP15_2544 0.84 +0.0 2,691,363 - HP15_2544 0.85 +0.6 2,691,436 - HP15_2544 0.89 +1.0 2,691,484 + +0.4 2,691,554 - -0.0 2,691,573 + +1.9 2,691,573 - +0.5 2,691,574 + -0.2 2,691,574 + -0.1 2,691,660 + +1.6 2,691,660 + -0.6 2,691,668 - -0.8 2,691,775 + -0.5 2,691,814 - -0.5 2,691,819 + -0.3 2,691,827 - -1.1 2,691,845 + -0.5 2,691,914 - +0.7 2,691,935 - -3.0 2,691,935 - +0.3 2,691,937 + -0.0 2,691,945 - HP15_2545 0.10 +1.3 2,691,945 - HP15_2545 0.10 +2.0 2,691,967 + HP15_2545 0.12 +0.2 2,691,975 - HP15_2545 0.13 +1.8 2,692,204 + HP15_2545 0.36 +1.8 2,692,229 - HP15_2545 0.39 -0.5 2,692,265 + HP15_2545 0.43 -0.2 2,692,344 - HP15_2545 0.51 -0.2 2,692,350 - HP15_2545 0.51 +1.3 2,692,419 - HP15_2545 0.58 -0.3 2,692,430 + HP15_2545 0.60 -0.8 2,692,430 + HP15_2545 0.60 -0.4 2,692,430 + HP15_2545 0.60 -0.6 2,692,430 + HP15_2545 0.60 +2.1 2,692,438 - HP15_2545 0.60 +1.6 2,692,438 - HP15_2545 0.60 -0.5 2,692,472 - HP15_2545 0.64 -0.5 2,692,558 + HP15_2545 0.73 +1.2 2,692,819 + +0.3 2,692,883 + -0.5 2,692,976 + -1.0 2,692,979 - -0.1 2,693,056 + HP15_2546 0.15 -0.5 2,693,155 + HP15_2546 0.33 -0.4 2,693,155 + HP15_2546 0.33 -1.4 2,693,162 + HP15_2546 0.34 -0.1 2,693,163 - HP15_2546 0.34 +0.4 2,693,163 - HP15_2546 0.34 -0.5 2,693,163 - HP15_2546 0.34 +1.3 2,693,163 - HP15_2546 0.34 +0.7 2,693,163 - HP15_2546 0.34 +0.1 2,693,163 - HP15_2546 0.34 -0.2 2,693,184 - HP15_2546 0.38 +1.7 2,693,527 - -0.3 2,693,544 + -0.9 2,693,628 + -0.3 2,693,708 + +1.8
Or see this region's nucleotide sequence