Strain Fitness in Marinobacter adhaerens HP15 around HP15_2332

Experiment: L-Glutamic as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2330 and HP15_2331 are separated by 89 nucleotidesHP15_2331 and HP15_2332 are separated by 17 nucleotidesHP15_2332 and HP15_2333 are separated by 224 nucleotidesHP15_2333 and HP15_2334 are separated by 51 nucleotides HP15_2330: HP15_2330 - two component, sigma54 specific, transcriptional regulator, Fis family, at 2,450,168 to 2,451,601 _2330 HP15_2331: HP15_2331 - SOS cell division inhibitor, at 2,451,691 to 2,452,020 _2331 HP15_2332: HP15_2332 - secreted protein containing DUF1329, at 2,452,038 to 2,453,396 _2332 HP15_2333: HP15_2333 - conserved hypothetical protein, at 2,453,621 to 2,454,133 _2333 HP15_2334: HP15_2334 - conserved hypothetical protein, at 2,454,185 to 2,454,445 _2334 Position (kb) 2452 2453 2454Strain fitness (log2 ratio) -1 0 1 2at 2451.064 kb on + strand, within HP15_2330at 2451.181 kb on + strand, within HP15_2330at 2451.207 kb on - strand, within HP15_2330at 2451.249 kb on + strand, within HP15_2330at 2451.252 kb on - strand, within HP15_2330at 2451.254 kb on + strand, within HP15_2330at 2451.254 kb on + strand, within HP15_2330at 2451.264 kb on + strand, within HP15_2330at 2451.272 kb on - strand, within HP15_2330at 2451.327 kb on + strand, within HP15_2330at 2451.354 kb on + strand, within HP15_2330at 2451.381 kb on + strand, within HP15_2330at 2451.388 kb on - strand, within HP15_2330at 2451.394 kb on - strand, within HP15_2330at 2451.396 kb on + strand, within HP15_2330at 2451.396 kb on + strand, within HP15_2330at 2451.404 kb on - strand, within HP15_2330at 2451.491 kb on + strandat 2451.652 kb on + strandat 2451.660 kb on - strandat 2451.660 kb on - strandat 2451.765 kb on - strand, within HP15_2331at 2451.765 kb on - strand, within HP15_2331at 2451.765 kb on - strand, within HP15_2331at 2451.822 kb on + strand, within HP15_2331at 2451.994 kb on + strandat 2452.001 kb on - strandat 2452.183 kb on + strand, within HP15_2332at 2452.222 kb on + strand, within HP15_2332at 2452.370 kb on - strand, within HP15_2332at 2452.493 kb on + strand, within HP15_2332at 2452.561 kb on - strand, within HP15_2332at 2452.679 kb on + strand, within HP15_2332at 2452.835 kb on - strand, within HP15_2332at 2452.935 kb on + strand, within HP15_2332at 2452.935 kb on + strand, within HP15_2332at 2452.935 kb on + strand, within HP15_2332at 2452.957 kb on + strand, within HP15_2332at 2453.016 kb on - strand, within HP15_2332at 2453.027 kb on + strand, within HP15_2332at 2453.235 kb on - strand, within HP15_2332at 2453.328 kb on - strandat 2453.331 kb on + strandat 2453.397 kb on + strandat 2453.567 kb on - strandat 2453.667 kb on + strandat 2453.677 kb on + strand, within HP15_2333at 2453.677 kb on + strand, within HP15_2333at 2453.677 kb on + strand, within HP15_2333at 2453.738 kb on - strand, within HP15_2333at 2453.793 kb on + strand, within HP15_2333at 2453.850 kb on + strand, within HP15_2333at 2453.857 kb on - strand, within HP15_2333at 2453.883 kb on + strand, within HP15_2333at 2453.891 kb on - strand, within HP15_2333at 2453.891 kb on - strand, within HP15_2333at 2453.891 kb on - strand, within HP15_2333at 2453.891 kb on - strand, within HP15_2333at 2453.891 kb on - strand, within HP15_2333at 2453.924 kb on - strand, within HP15_2333at 2453.956 kb on - strand, within HP15_2333at 2454.248 kb on + strand, within HP15_2334

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic as (N)
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2,451,064 + HP15_2330 0.62 +1.8
2,451,181 + HP15_2330 0.71 +1.5
2,451,207 - HP15_2330 0.72 +1.7
2,451,249 + HP15_2330 0.75 +1.6
2,451,252 - HP15_2330 0.76 +1.2
2,451,254 + HP15_2330 0.76 +1.4
2,451,254 + HP15_2330 0.76 +1.4
2,451,264 + HP15_2330 0.76 +1.6
2,451,272 - HP15_2330 0.77 +1.8
2,451,327 + HP15_2330 0.81 +0.8
2,451,354 + HP15_2330 0.83 +1.6
2,451,381 + HP15_2330 0.85 +1.7
2,451,388 - HP15_2330 0.85 +1.3
2,451,394 - HP15_2330 0.85 +1.7
2,451,396 + HP15_2330 0.86 +2.3
2,451,396 + HP15_2330 0.86 +1.8
2,451,404 - HP15_2330 0.86 +1.5
2,451,491 + +1.6
2,451,652 + +1.8
2,451,660 - +0.4
2,451,660 - -0.6
2,451,765 - HP15_2331 0.22 +1.4
2,451,765 - HP15_2331 0.22 +1.1
2,451,765 - HP15_2331 0.22 +1.5
2,451,822 + HP15_2331 0.40 +0.6
2,451,994 + +0.8
2,452,001 - +1.6
2,452,183 + HP15_2332 0.11 -0.5
2,452,222 + HP15_2332 0.14 -0.7
2,452,370 - HP15_2332 0.24 -0.1
2,452,493 + HP15_2332 0.33 -0.6
2,452,561 - HP15_2332 0.38 -0.4
2,452,679 + HP15_2332 0.47 -1.4
2,452,835 - HP15_2332 0.59 -0.4
2,452,935 + HP15_2332 0.66 -0.2
2,452,935 + HP15_2332 0.66 +1.4
2,452,935 + HP15_2332 0.66 +1.2
2,452,957 + HP15_2332 0.68 -0.8
2,453,016 - HP15_2332 0.72 -1.3
2,453,027 + HP15_2332 0.73 -0.9
2,453,235 - HP15_2332 0.88 +0.3
2,453,328 - +0.3
2,453,331 + -1.1
2,453,397 + +0.7
2,453,567 - +1.5
2,453,667 + -0.6
2,453,677 + HP15_2333 0.11 -0.1
2,453,677 + HP15_2333 0.11 +0.4
2,453,677 + HP15_2333 0.11 +0.6
2,453,738 - HP15_2333 0.23 -0.4
2,453,793 + HP15_2333 0.34 +0.2
2,453,850 + HP15_2333 0.45 +1.3
2,453,857 - HP15_2333 0.46 +0.8
2,453,883 + HP15_2333 0.51 -0.3
2,453,891 - HP15_2333 0.53 +0.1
2,453,891 - HP15_2333 0.53 +0.3
2,453,891 - HP15_2333 0.53 +0.4
2,453,891 - HP15_2333 0.53 +2.3
2,453,891 - HP15_2333 0.53 +1.1
2,453,924 - HP15_2333 0.59 +0.9
2,453,956 - HP15_2333 0.65 -1.6
2,454,248 + HP15_2334 0.24 +0.5

Or see this region's nucleotide sequence