Experiment: L-Glutamic as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1663 and HP15_1664 are separated by 117 nucleotides HP15_1664 and HP15_1665 are separated by 103 nucleotides HP15_1665 and HP15_1666 are separated by 218 nucleotides
HP15_1663: HP15_1663 - conserved hypothetical protein, at 1,755,172 to 1,756,167
_1663
HP15_1664: HP15_1664 - thioredoxin, at 1,756,285 to 1,756,608
_1664
HP15_1665: HP15_1665 - transcriptional regulator, LysR family, at 1,756,712 to 1,757,665
_1665
HP15_1666: HP15_1666 - conserved hypothetical protein, at 1,757,884 to 1,758,615
_1666
Position (kb)
1756
1757
1758 Strain fitness (log2 ratio)
-1
0
1
2 at 1755.858 kb on + strand, within HP15_1663 at 1756.026 kb on + strand, within HP15_1663 at 1756.131 kb on + strand at 1756.131 kb on + strand at 1756.139 kb on - strand at 1756.139 kb on - strand at 1756.202 kb on + strand at 1756.282 kb on + strand at 1756.283 kb on - strand at 1756.328 kb on + strand, within HP15_1664 at 1756.328 kb on + strand, within HP15_1664 at 1756.330 kb on + strand, within HP15_1664 at 1756.333 kb on + strand, within HP15_1664 at 1756.336 kb on - strand, within HP15_1664 at 1756.338 kb on - strand, within HP15_1664 at 1756.340 kb on + strand, within HP15_1664 at 1756.346 kb on + strand, within HP15_1664 at 1756.354 kb on - strand, within HP15_1664 at 1756.376 kb on + strand, within HP15_1664 at 1756.462 kb on + strand, within HP15_1664 at 1756.524 kb on + strand, within HP15_1664 at 1756.538 kb on - strand, within HP15_1664 at 1756.610 kb on + strand at 1756.727 kb on + strand at 1756.779 kb on + strand at 1756.881 kb on - strand, within HP15_1665 at 1756.901 kb on - strand, within HP15_1665 at 1756.941 kb on - strand, within HP15_1665 at 1756.967 kb on - strand, within HP15_1665 at 1757.083 kb on + strand, within HP15_1665 at 1757.093 kb on - strand, within HP15_1665 at 1757.123 kb on + strand, within HP15_1665 at 1757.131 kb on - strand, within HP15_1665 at 1757.143 kb on - strand, within HP15_1665 at 1757.198 kb on - strand, within HP15_1665 at 1757.257 kb on + strand, within HP15_1665 at 1757.293 kb on + strand, within HP15_1665 at 1757.298 kb on + strand, within HP15_1665 at 1757.323 kb on - strand, within HP15_1665 at 1757.340 kb on - strand, within HP15_1665 at 1757.405 kb on - strand, within HP15_1665 at 1757.443 kb on - strand, within HP15_1665 at 1757.483 kb on - strand, within HP15_1665 at 1757.489 kb on - strand, within HP15_1665 at 1757.517 kb on + strand, within HP15_1665 at 1757.525 kb on - strand, within HP15_1665 at 1757.585 kb on + strand at 1757.988 kb on + strand, within HP15_1666 at 1757.996 kb on - strand, within HP15_1666 at 1758.163 kb on + strand, within HP15_1666 at 1758.359 kb on - strand, within HP15_1666 at 1758.369 kb on - strand, within HP15_1666 at 1758.437 kb on - strand, within HP15_1666 at 1758.486 kb on - strand, within HP15_1666 at 1758.508 kb on + strand, within HP15_1666 at 1758.550 kb on - strand at 1758.550 kb on - strand at 1758.573 kb on - strand at 1758.579 kb on + strand at 1758.579 kb on + strand at 1758.595 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic as (N) remove 1,755,858 + HP15_1663 0.69 +1.6 1,756,026 + HP15_1663 0.86 -0.0 1,756,131 + +0.3 1,756,131 + +1.4 1,756,139 - +1.2 1,756,139 - +1.4 1,756,202 + -0.0 1,756,282 + -0.5 1,756,283 - -0.9 1,756,328 + HP15_1664 0.13 +0.3 1,756,328 + HP15_1664 0.13 +0.3 1,756,330 + HP15_1664 0.14 +0.1 1,756,333 + HP15_1664 0.15 -0.5 1,756,336 - HP15_1664 0.16 -1.1 1,756,338 - HP15_1664 0.16 -0.5 1,756,340 + HP15_1664 0.17 -0.2 1,756,346 + HP15_1664 0.19 +0.1 1,756,354 - HP15_1664 0.21 +1.9 1,756,376 + HP15_1664 0.28 -0.1 1,756,462 + HP15_1664 0.55 -0.4 1,756,524 + HP15_1664 0.74 +1.9 1,756,538 - HP15_1664 0.78 -0.9 1,756,610 + -0.2 1,756,727 + +1.5 1,756,779 + +1.7 1,756,881 - HP15_1665 0.18 +1.2 1,756,901 - HP15_1665 0.20 -0.5 1,756,941 - HP15_1665 0.24 -1.2 1,756,967 - HP15_1665 0.27 -0.2 1,757,083 + HP15_1665 0.39 +0.3 1,757,093 - HP15_1665 0.40 +1.8 1,757,123 + HP15_1665 0.43 -0.3 1,757,131 - HP15_1665 0.44 +1.4 1,757,143 - HP15_1665 0.45 +0.9 1,757,198 - HP15_1665 0.51 +1.7 1,757,257 + HP15_1665 0.57 -0.1 1,757,293 + HP15_1665 0.61 +1.3 1,757,298 + HP15_1665 0.61 +1.0 1,757,323 - HP15_1665 0.64 -0.3 1,757,340 - HP15_1665 0.66 +1.0 1,757,405 - HP15_1665 0.73 +0.3 1,757,443 - HP15_1665 0.77 +0.2 1,757,483 - HP15_1665 0.81 +1.8 1,757,489 - HP15_1665 0.81 -0.5 1,757,517 + HP15_1665 0.84 +0.1 1,757,525 - HP15_1665 0.85 +2.3 1,757,585 + +1.8 1,757,988 + HP15_1666 0.14 -0.3 1,757,996 - HP15_1666 0.15 +0.5 1,758,163 + HP15_1666 0.38 +0.3 1,758,359 - HP15_1666 0.65 +1.2 1,758,369 - HP15_1666 0.66 -0.4 1,758,437 - HP15_1666 0.76 +1.8 1,758,486 - HP15_1666 0.82 +0.8 1,758,508 + HP15_1666 0.85 -0.8 1,758,550 - +1.7 1,758,550 - -1.3 1,758,573 - +1.4 1,758,579 + +1.3 1,758,579 + -0.3 1,758,595 + +1.8
Or see this region's nucleotide sequence