Experiment: L-Glutamic as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_11 and HP15_12 are separated by 1 nucleotides HP15_12 and HP15_13 are separated by 143 nucleotides HP15_13 and HP15_14 are separated by 38 nucleotides
HP15_11: HP15_11 - conserved hypothetical protein, at 13,976 to 14,941
_11
HP15_12: HP15_12 - enoyl-CoA hydratase/isomerase, at 14,943 to 15,755
_12
HP15_13: HP15_13 - short-chain dehydrogenase/reductase SDR, at 15,899 to 16,627
_13
HP15_14: HP15_14 - transcriptional regulator, TetR family, at 16,666 to 17,247
_14
Position (kb)
14
15
16 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 13.976 kb on - strand at 14.148 kb on - strand, within HP15_11 at 14.245 kb on + strand, within HP15_11 at 14.271 kb on - strand, within HP15_11 at 14.443 kb on - strand, within HP15_11 at 14.487 kb on + strand, within HP15_11 at 14.535 kb on - strand, within HP15_11 at 14.554 kb on + strand, within HP15_11 at 14.562 kb on - strand, within HP15_11 at 14.566 kb on - strand, within HP15_11 at 14.578 kb on - strand, within HP15_11 at 14.583 kb on - strand, within HP15_11 at 14.583 kb on - strand, within HP15_11 at 14.620 kb on + strand, within HP15_11 at 14.707 kb on + strand, within HP15_11 at 14.715 kb on - strand, within HP15_11 at 14.754 kb on + strand, within HP15_11 at 14.796 kb on + strand, within HP15_11 at 14.847 kb on + strand at 14.872 kb on + strand at 14.873 kb on + strand at 14.879 kb on + strand at 14.880 kb on - strand at 14.903 kb on - strand at 14.918 kb on + strand at 14.920 kb on + strand at 14.935 kb on + strand at 14.940 kb on + strand at 15.103 kb on - strand, within HP15_12 at 15.157 kb on - strand, within HP15_12 at 15.235 kb on + strand, within HP15_12 at 15.235 kb on + strand, within HP15_12 at 15.312 kb on - strand, within HP15_12 at 15.315 kb on + strand, within HP15_12 at 15.315 kb on + strand, within HP15_12 at 15.354 kb on + strand, within HP15_12 at 15.463 kb on - strand, within HP15_12 at 15.463 kb on - strand, within HP15_12 at 15.463 kb on - strand, within HP15_12 at 15.463 kb on - strand, within HP15_12 at 15.485 kb on + strand, within HP15_12 at 15.485 kb on + strand, within HP15_12 at 15.485 kb on + strand, within HP15_12 at 15.493 kb on + strand, within HP15_12 at 15.493 kb on + strand, within HP15_12 at 15.493 kb on - strand, within HP15_12 at 15.493 kb on - strand, within HP15_12 at 15.493 kb on - strand, within HP15_12 at 15.493 kb on - strand, within HP15_12 at 15.501 kb on - strand, within HP15_12 at 15.546 kb on + strand, within HP15_12 at 15.839 kb on + strand at 15.851 kb on + strand at 16.008 kb on + strand, within HP15_13 at 16.015 kb on + strand, within HP15_13 at 16.069 kb on - strand, within HP15_13 at 16.079 kb on - strand, within HP15_13 at 16.086 kb on + strand, within HP15_13 at 16.100 kb on - strand, within HP15_13 at 16.162 kb on + strand, within HP15_13 at 16.162 kb on + strand, within HP15_13 at 16.162 kb on + strand, within HP15_13 at 16.162 kb on + strand, within HP15_13 at 16.170 kb on - strand, within HP15_13 at 16.182 kb on + strand, within HP15_13 at 16.183 kb on - strand, within HP15_13 at 16.183 kb on - strand, within HP15_13 at 16.207 kb on + strand, within HP15_13 at 16.242 kb on + strand, within HP15_13 at 16.247 kb on + strand, within HP15_13 at 16.250 kb on - strand, within HP15_13 at 16.250 kb on - strand, within HP15_13 at 16.280 kb on + strand, within HP15_13 at 16.291 kb on + strand, within HP15_13 at 16.291 kb on + strand, within HP15_13 at 16.291 kb on + strand, within HP15_13 at 16.299 kb on - strand, within HP15_13 at 16.404 kb on + strand, within HP15_13 at 16.412 kb on - strand, within HP15_13 at 16.413 kb on + strand, within HP15_13 at 16.413 kb on + strand, within HP15_13 at 16.421 kb on - strand, within HP15_13 at 16.421 kb on - strand, within HP15_13 at 16.421 kb on - strand, within HP15_13 at 16.460 kb on - strand, within HP15_13 at 16.504 kb on - strand, within HP15_13 at 16.563 kb on + strand at 16.567 kb on + strand at 16.571 kb on - strand at 16.571 kb on - strand at 16.606 kb on + strand at 16.614 kb on - strand at 16.614 kb on - strand at 16.619 kb on + strand at 16.620 kb on + strand at 16.627 kb on - strand at 16.629 kb on - strand at 16.714 kb on - strand at 16.729 kb on - strand, within HP15_14 at 16.729 kb on - strand, within HP15_14 at 16.731 kb on + strand, within HP15_14 at 16.731 kb on + strand, within HP15_14 at 16.734 kb on - strand, within HP15_14
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic as (N) remove 13,976 - -0.1 14,148 - HP15_11 0.18 +1.5 14,245 + HP15_11 0.28 +1.6 14,271 - HP15_11 0.31 +1.6 14,443 - HP15_11 0.48 +0.3 14,487 + HP15_11 0.53 -1.1 14,535 - HP15_11 0.58 -1.0 14,554 + HP15_11 0.60 -0.2 14,562 - HP15_11 0.61 +1.6 14,566 - HP15_11 0.61 +2.0 14,578 - HP15_11 0.62 +1.4 14,583 - HP15_11 0.63 -0.4 14,583 - HP15_11 0.63 +2.0 14,620 + HP15_11 0.67 +0.9 14,707 + HP15_11 0.76 -0.3 14,715 - HP15_11 0.77 -0.8 14,754 + HP15_11 0.81 -0.4 14,796 + HP15_11 0.85 -0.7 14,847 + +0.8 14,872 + -0.5 14,873 + -0.9 14,879 + +1.2 14,880 - +1.5 14,903 - +2.0 14,918 + -0.0 14,920 + -0.5 14,935 + -1.3 14,940 + +0.9 15,103 - HP15_12 0.20 -0.3 15,157 - HP15_12 0.26 -0.8 15,235 + HP15_12 0.36 +1.3 15,235 + HP15_12 0.36 +0.2 15,312 - HP15_12 0.45 -2.3 15,315 + HP15_12 0.46 +0.1 15,315 + HP15_12 0.46 +1.5 15,354 + HP15_12 0.51 +0.3 15,463 - HP15_12 0.64 +0.3 15,463 - HP15_12 0.64 -0.1 15,463 - HP15_12 0.64 -0.2 15,463 - HP15_12 0.64 +0.7 15,485 + HP15_12 0.67 +1.0 15,485 + HP15_12 0.67 -0.1 15,485 + HP15_12 0.67 -0.4 15,493 + HP15_12 0.68 +1.4 15,493 + HP15_12 0.68 +0.3 15,493 - HP15_12 0.68 +1.5 15,493 - HP15_12 0.68 +1.9 15,493 - HP15_12 0.68 +1.6 15,493 - HP15_12 0.68 +1.7 15,501 - HP15_12 0.69 +0.5 15,546 + HP15_12 0.74 -2.1 15,839 + +1.6 15,851 + -0.4 16,008 + HP15_13 0.15 -0.7 16,015 + HP15_13 0.16 +1.7 16,069 - HP15_13 0.23 -0.2 16,079 - HP15_13 0.25 -1.3 16,086 + HP15_13 0.26 +0.7 16,100 - HP15_13 0.28 +1.0 16,162 + HP15_13 0.36 +0.8 16,162 + HP15_13 0.36 +1.8 16,162 + HP15_13 0.36 -1.4 16,162 + HP15_13 0.36 +1.5 16,170 - HP15_13 0.37 -0.2 16,182 + HP15_13 0.39 +1.3 16,183 - HP15_13 0.39 -0.4 16,183 - HP15_13 0.39 +0.3 16,207 + HP15_13 0.42 +1.5 16,242 + HP15_13 0.47 -0.2 16,247 + HP15_13 0.48 -0.5 16,250 - HP15_13 0.48 -0.1 16,250 - HP15_13 0.48 +1.8 16,280 + HP15_13 0.52 -1.6 16,291 + HP15_13 0.54 +1.5 16,291 + HP15_13 0.54 -0.1 16,291 + HP15_13 0.54 +0.0 16,299 - HP15_13 0.55 +1.9 16,404 + HP15_13 0.69 +1.0 16,412 - HP15_13 0.70 +0.7 16,413 + HP15_13 0.71 +0.4 16,413 + HP15_13 0.71 +1.8 16,421 - HP15_13 0.72 +1.2 16,421 - HP15_13 0.72 -0.8 16,421 - HP15_13 0.72 +1.4 16,460 - HP15_13 0.77 +1.8 16,504 - HP15_13 0.83 +0.8 16,563 + +1.7 16,567 + -0.6 16,571 - -0.3 16,571 - +0.7 16,606 + +1.6 16,614 - +2.2 16,614 - -0.3 16,619 + +1.0 16,620 + -0.4 16,627 - +2.1 16,629 - +0.5 16,714 - +0.4 16,729 - HP15_14 0.11 -0.5 16,729 - HP15_14 0.11 -0.3 16,731 + HP15_14 0.11 -1.2 16,731 + HP15_14 0.11 +1.6 16,734 - HP15_14 0.12 -0.1
Or see this region's nucleotide sequence