Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3175

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3174 and DvMF_3175 are separated by 220 nucleotidesDvMF_3175 and DvMF_3176 are separated by 294 nucleotides DvMF_3174: DvMF_3174 - putative two component transcriptional regulator, winged helix family (RefSeq), at 4,003,669 to 4,004,508 _3174 DvMF_3175: DvMF_3175 - Rubrerythrin (RefSeq), at 4,004,729 to 4,005,223 _3175 DvMF_3176: DvMF_3176 - DNA topoisomerase III (RefSeq), at 4,005,518 to 4,008,139 _3176 Position (kb) 4004 4005 4006Strain fitness (log2 ratio) -1 0 1 2 3 4at 4003.896 kb on - strand, within DvMF_3174at 4004.673 kb on + strandat 4004.885 kb on - strand, within DvMF_3175at 4004.909 kb on - strand, within DvMF_3175at 4004.909 kb on - strand, within DvMF_3175at 4004.911 kb on + strand, within DvMF_3175at 4005.414 kb on + strandat 4005.431 kb on + strandat 4005.833 kb on + strand, within DvMF_3176at 4005.839 kb on + strand, within DvMF_3176at 4005.841 kb on - strand, within DvMF_3176at 4005.947 kb on - strand, within DvMF_3176at 4006.107 kb on + strand, within DvMF_3176

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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4,003,896 - DvMF_3174 0.27 +4.6
4,004,673 + -0.7
4,004,885 - DvMF_3175 0.32 +0.1
4,004,909 - DvMF_3175 0.36 -0.6
4,004,909 - DvMF_3175 0.36 -0.7
4,004,911 + DvMF_3175 0.37 -0.4
4,005,414 + -0.3
4,005,431 + -0.2
4,005,833 + DvMF_3176 0.12 +0.1
4,005,839 + DvMF_3176 0.12 -0.1
4,005,841 - DvMF_3176 0.12 -0.8
4,005,947 - DvMF_3176 0.16 -1.3
4,006,107 + DvMF_3176 0.22 -1.3

Or see this region's nucleotide sequence