Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3115

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3114 and DvMF_3115 are separated by 158 nucleotidesDvMF_3115 and DvMF_3116 are separated by 518 nucleotides DvMF_3114: DvMF_3114 - hypothetical protein (RefSeq), at 3,927,746 to 3,930,994 _3114 DvMF_3115: DvMF_3115 - nitroreductase (RefSeq), at 3,931,153 to 3,931,977 _3115 DvMF_3116: DvMF_3116 - methyl-accepting chemotaxis sensory transducer with Cache sensor (RefSeq), at 3,932,496 to 3,934,916 _3116 Position (kb) 3931 3932Strain fitness (log2 ratio) -1 0 1at 3930.796 kb on - strandat 3930.845 kb on + strandat 3930.845 kb on + strandat 3930.845 kb on + strandat 3931.341 kb on + strand, within DvMF_3115at 3931.490 kb on - strand, within DvMF_3115at 3931.617 kb on + strand, within DvMF_3115at 3932.085 kb on + strandat 3932.430 kb on - strandat 3932.574 kb on - strandat 3932.693 kb on - strandat 3932.838 kb on - strand, within DvMF_3116

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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3,930,796 - +0.2
3,930,845 + +0.2
3,930,845 + +0.9
3,930,845 + -0.3
3,931,341 + DvMF_3115 0.23 -0.2
3,931,490 - DvMF_3115 0.41 -0.3
3,931,617 + DvMF_3115 0.56 +0.2
3,932,085 + -0.6
3,932,430 - -0.3
3,932,574 - -0.4
3,932,693 - -0.6
3,932,838 - DvMF_3116 0.14 -0.2

Or see this region's nucleotide sequence