Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2949

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2948 and DvMF_2949 are separated by 176 nucleotidesDvMF_2949 and DvMF_2950 are separated by 507 nucleotides DvMF_2948: DvMF_2948 - transcriptional regulator, AraC family (RefSeq), at 3,719,776 to 3,720,675 _2948 DvMF_2949: DvMF_2949 - 3-methyl-2-oxobutanoate hydroxymethyltransferase (RefSeq), at 3,720,852 to 3,721,754 _2949 DvMF_2950: DvMF_2950 - flagellin domain protein (RefSeq), at 3,722,262 to 3,723,152 _2950 Position (kb) 3720 3721 3722Strain fitness (log2 ratio) -2 -1 0 1at 3719.957 kb on + strand, within DvMF_2948at 3720.128 kb on + strand, within DvMF_2948at 3721.083 kb on + strand, within DvMF_2949at 3721.161 kb on + strand, within DvMF_2949at 3721.408 kb on + strand, within DvMF_2949at 3721.992 kb on - strandat 3722.121 kb on - strandat 3722.620 kb on - strand, within DvMF_2950at 3722.672 kb on + strand, within DvMF_2950at 3722.680 kb on - strand, within DvMF_2950at 3722.732 kb on + strand, within DvMF_2950

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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3,719,957 + DvMF_2948 0.20 -0.6
3,720,128 + DvMF_2948 0.39 -0.3
3,721,083 + DvMF_2949 0.26 -1.1
3,721,161 + DvMF_2949 0.34 -0.3
3,721,408 + DvMF_2949 0.62 -2.6
3,721,992 - -1.1
3,722,121 - +0.7
3,722,620 - DvMF_2950 0.40 +0.4
3,722,672 + DvMF_2950 0.46 -0.2
3,722,680 - DvMF_2950 0.47 +0.1
3,722,732 + DvMF_2950 0.53 -0.3

Or see this region's nucleotide sequence