Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2859

Experiment: MoYLS4 with nitrate 50 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2858 and DvMF_2859 are separated by 178 nucleotidesDvMF_2859 and DvMF_2860 are separated by 265 nucleotidesDvMF_2860 and DvMF_2861 are separated by 227 nucleotides DvMF_2858: DvMF_2858 - short-chain dehydrogenase/reductase SDR (RefSeq), at 3,609,961 to 3,610,698 _2858 DvMF_2859: DvMF_2859 - hypothetical protein (RefSeq), at 3,610,877 to 3,611,665 _2859 DvMF_2860: DvMF_2860 - response regulator receiver protein (RefSeq), at 3,611,931 to 3,612,329 _2860 DvMF_2861: DvMF_2861 - import inner membrane translocase subunit Tim44 (RefSeq), at 3,612,557 to 3,613,483 _2861 Position (kb) 3610 3611 3612Strain fitness (log2 ratio) -1 0 1at 3609.925 kb on + strandat 3610.007 kb on + strandat 3610.136 kb on - strand, within DvMF_2858at 3610.219 kb on + strand, within DvMF_2858at 3610.414 kb on - strand, within DvMF_2858at 3610.469 kb on - strand, within DvMF_2858at 3610.504 kb on - strand, within DvMF_2858at 3610.728 kb on - strandat 3610.770 kb on - strandat 3611.437 kb on - strand, within DvMF_2859at 3611.736 kb on - strandat 3611.976 kb on + strand, within DvMF_2860at 3612.318 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
remove
3,609,925 + -0.4
3,610,007 + -0.7
3,610,136 - DvMF_2858 0.24 -0.4
3,610,219 + DvMF_2858 0.35 -0.4
3,610,414 - DvMF_2858 0.61 +1.6
3,610,469 - DvMF_2858 0.69 -1.4
3,610,504 - DvMF_2858 0.74 -0.7
3,610,728 - +0.3
3,610,770 - -0.7
3,611,437 - DvMF_2859 0.71 +0.1
3,611,736 - -1.1
3,611,976 + DvMF_2860 0.11 +0.9
3,612,318 - -1.0

Or see this region's nucleotide sequence