Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2665

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2664 and DvMF_2665 are separated by 129 nucleotidesDvMF_2665 and DvMF_2666 are separated by 585 nucleotides DvMF_2664: DvMF_2664 - PDZ/DHR/GLGF domain protein (RefSeq), at 3,365,822 to 3,367,024 _2664 DvMF_2665: DvMF_2665 - hypothetical protein (RefSeq), at 3,367,154 to 3,368,788 _2665 DvMF_2666: DvMF_2666 - protein of unknown function UPF0047 (RefSeq), at 3,369,374 to 3,369,790 _2666 Position (kb) 3367 3368 3369Strain fitness (log2 ratio) -1 0 1at 3366.168 kb on - strand, within DvMF_2664at 3366.255 kb on - strand, within DvMF_2664at 3366.406 kb on + strand, within DvMF_2664at 3366.414 kb on - strand, within DvMF_2664at 3366.414 kb on - strand, within DvMF_2664at 3366.483 kb on + strand, within DvMF_2664at 3366.667 kb on + strand, within DvMF_2664at 3366.675 kb on - strand, within DvMF_2664at 3366.738 kb on + strand, within DvMF_2664at 3366.811 kb on - strand, within DvMF_2664at 3366.816 kb on - strand, within DvMF_2664at 3366.846 kb on - strand, within DvMF_2664at 3367.070 kb on - strandat 3367.431 kb on + strand, within DvMF_2665at 3367.953 kb on - strand, within DvMF_2665at 3367.953 kb on - strand, within DvMF_2665at 3368.038 kb on + strand, within DvMF_2665at 3368.193 kb on - strand, within DvMF_2665at 3368.264 kb on + strand, within DvMF_2665at 3368.752 kb on + strandat 3369.236 kb on + strandat 3369.244 kb on - strandat 3369.253 kb on - strandat 3369.259 kb on + strandat 3369.493 kb on + strand, within DvMF_2666at 3369.608 kb on + strand, within DvMF_2666at 3369.652 kb on + strand, within DvMF_2666at 3369.652 kb on + strand, within DvMF_2666at 3369.703 kb on + strand, within DvMF_2666at 3369.705 kb on + strand, within DvMF_2666

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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3,366,168 - DvMF_2664 0.29 +0.4
3,366,255 - DvMF_2664 0.36 -0.9
3,366,406 + DvMF_2664 0.49 -0.5
3,366,414 - DvMF_2664 0.49 -0.0
3,366,414 - DvMF_2664 0.49 -0.5
3,366,483 + DvMF_2664 0.55 -0.2
3,366,667 + DvMF_2664 0.70 -0.6
3,366,675 - DvMF_2664 0.71 -0.7
3,366,738 + DvMF_2664 0.76 -0.4
3,366,811 - DvMF_2664 0.82 -1.0
3,366,816 - DvMF_2664 0.83 -0.6
3,366,846 - DvMF_2664 0.85 -0.3
3,367,070 - -0.4
3,367,431 + DvMF_2665 0.17 +0.0
3,367,953 - DvMF_2665 0.49 -1.7
3,367,953 - DvMF_2665 0.49 -0.4
3,368,038 + DvMF_2665 0.54 -0.7
3,368,193 - DvMF_2665 0.64 +0.8
3,368,264 + DvMF_2665 0.68 +0.3
3,368,752 + -0.9
3,369,236 + -0.8
3,369,244 - -0.2
3,369,253 - +0.1
3,369,259 + -0.6
3,369,493 + DvMF_2666 0.29 -0.2
3,369,608 + DvMF_2666 0.56 -0.0
3,369,652 + DvMF_2666 0.67 -0.3
3,369,652 + DvMF_2666 0.67 +0.3
3,369,703 + DvMF_2666 0.79 -0.8
3,369,705 + DvMF_2666 0.79 +0.3

Or see this region's nucleotide sequence