Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2088

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntasnC and DvMF_2088 are separated by 348 nucleotidesDvMF_2088 and DvMF_R0053 are separated by 550 nucleotidesDvMF_R0053 and DvMF_2089 are separated by 143 nucleotides DvMF_2087: asnC - asparaginyl-tRNA synthetase (RefSeq), at 2,598,392 to 2,599,807 asnC DvMF_2088: DvMF_2088 - hypothetical protein (RefSeq), at 2,600,156 to 2,600,329 _2088 DvMF_R0053: DvMF_R0053 - tRNA-Ala (RefSeq), at 2,600,880 to 2,600,955 _R0053 DvMF_2089: DvMF_2089 - Rubrerythrin (RefSeq), at 2,601,099 to 2,601,707 _2089 Position (kb) 2600 2601Strain fitness (log2 ratio) -1 0 1at 2599.263 kb on - strand, within asnCat 2599.478 kb on - strand, within asnCat 2599.501 kb on + strand, within asnCat 2599.502 kb on + strand, within asnCat 2599.529 kb on + strand, within asnCat 2599.587 kb on + strand, within asnCat 2599.888 kb on + strandat 2599.888 kb on + strandat 2599.982 kb on + strandat 2600.336 kb on + strandat 2601.041 kb on + strandat 2601.049 kb on - strandat 2601.115 kb on - strandat 2601.161 kb on - strand, within DvMF_2089at 2601.199 kb on - strand, within DvMF_2089at 2601.239 kb on + strand, within DvMF_2089at 2601.295 kb on + strand, within DvMF_2089at 2601.322 kb on + strand, within DvMF_2089

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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2,599,263 - asnC DvMF_2087 0.62 -0.4
2,599,478 - asnC DvMF_2087 0.77 -0.3
2,599,501 + asnC DvMF_2087 0.78 -0.8
2,599,502 + asnC DvMF_2087 0.78 -0.5
2,599,529 + asnC DvMF_2087 0.80 +0.4
2,599,587 + asnC DvMF_2087 0.84 -0.0
2,599,888 + -0.3
2,599,888 + -0.8
2,599,982 + -0.3
2,600,336 + -1.1
2,601,041 + -0.5
2,601,049 - -1.6
2,601,115 - +0.1
2,601,161 - DvMF_2089 0.10 -0.8
2,601,199 - DvMF_2089 0.16 -0.5
2,601,239 + DvMF_2089 0.23 -0.5
2,601,295 + DvMF_2089 0.32 -0.1
2,601,322 + DvMF_2089 0.37 -1.3

Or see this region's nucleotide sequence