Experiment: MoYLS4 with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1949 and DvMF_1950 are separated by 333 nucleotides DvMF_1950 and DvMF_1951 are separated by 370 nucleotides DvMF_1951 and DvMF_1952 are separated by 171 nucleotides
DvMF_1949: DvMF_1949 - protein of unknown function DUF6 transmembrane (RefSeq), at 2,409,929 to 2,410,828
_1949
DvMF_1950: DvMF_1950 - transcriptional regulator, AraC family (RefSeq), at 2,411,162 to 2,412,178
_1950
DvMF_1951: DvMF_1951 - hypothetical protein (RefSeq), at 2,412,549 to 2,412,788
_1951
DvMF_1952: DvMF_1952 - glycosyl transferase family 2 (RefSeq), at 2,412,960 to 2,414,591
_1952
Position (kb)
2411
2412
2413 Strain fitness (log2 ratio)
-1
0
1 at 2410.503 kb on + strand, within DvMF_1949 at 2410.659 kb on - strand, within DvMF_1949 at 2410.779 kb on + strand at 2410.916 kb on + strand at 2411.149 kb on - strand at 2411.363 kb on + strand, within DvMF_1950 at 2411.371 kb on - strand, within DvMF_1950 at 2411.371 kb on - strand, within DvMF_1950 at 2411.477 kb on + strand, within DvMF_1950 at 2411.530 kb on - strand, within DvMF_1950 at 2412.012 kb on - strand, within DvMF_1950 at 2412.095 kb on + strand at 2412.133 kb on + strand at 2412.447 kb on - strand at 2412.476 kb on + strand at 2412.476 kb on + strand at 2412.484 kb on - strand at 2412.668 kb on + strand, within DvMF_1951 at 2412.744 kb on + strand, within DvMF_1951 at 2412.935 kb on + strand at 2412.935 kb on + strand at 2412.943 kb on - strand at 2412.943 kb on - strand at 2412.943 kb on - strand at 2412.987 kb on - strand at 2413.074 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM remove 2,410,503 + DvMF_1949 0.64 -0.2 2,410,659 - DvMF_1949 0.81 -0.0 2,410,779 + -0.5 2,410,916 + -0.3 2,411,149 - +0.2 2,411,363 + DvMF_1950 0.20 -1.6 2,411,371 - DvMF_1950 0.21 -0.8 2,411,371 - DvMF_1950 0.21 -1.0 2,411,477 + DvMF_1950 0.31 -0.3 2,411,530 - DvMF_1950 0.36 -0.4 2,412,012 - DvMF_1950 0.84 -0.6 2,412,095 + -0.3 2,412,133 + -0.7 2,412,447 - -0.4 2,412,476 + -0.4 2,412,476 + -0.8 2,412,484 - -0.4 2,412,668 + DvMF_1951 0.50 -0.1 2,412,744 + DvMF_1951 0.81 -0.4 2,412,935 + -0.2 2,412,935 + -1.1 2,412,943 - -0.2 2,412,943 - -0.6 2,412,943 - -0.3 2,412,987 - -0.6 2,413,074 - -0.3
Or see this region's nucleotide sequence