Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1950

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1949 and DvMF_1950 are separated by 333 nucleotidesDvMF_1950 and DvMF_1951 are separated by 370 nucleotidesDvMF_1951 and DvMF_1952 are separated by 171 nucleotides DvMF_1949: DvMF_1949 - protein of unknown function DUF6 transmembrane (RefSeq), at 2,409,929 to 2,410,828 _1949 DvMF_1950: DvMF_1950 - transcriptional regulator, AraC family (RefSeq), at 2,411,162 to 2,412,178 _1950 DvMF_1951: DvMF_1951 - hypothetical protein (RefSeq), at 2,412,549 to 2,412,788 _1951 DvMF_1952: DvMF_1952 - glycosyl transferase family 2 (RefSeq), at 2,412,960 to 2,414,591 _1952 Position (kb) 2411 2412 2413Strain fitness (log2 ratio) -1 0 1at 2410.503 kb on + strand, within DvMF_1949at 2410.659 kb on - strand, within DvMF_1949at 2410.779 kb on + strandat 2410.916 kb on + strandat 2411.149 kb on - strandat 2411.363 kb on + strand, within DvMF_1950at 2411.371 kb on - strand, within DvMF_1950at 2411.371 kb on - strand, within DvMF_1950at 2411.477 kb on + strand, within DvMF_1950at 2411.530 kb on - strand, within DvMF_1950at 2412.012 kb on - strand, within DvMF_1950at 2412.095 kb on + strandat 2412.133 kb on + strandat 2412.447 kb on - strandat 2412.476 kb on + strandat 2412.476 kb on + strandat 2412.484 kb on - strandat 2412.668 kb on + strand, within DvMF_1951at 2412.744 kb on + strand, within DvMF_1951at 2412.935 kb on + strandat 2412.935 kb on + strandat 2412.943 kb on - strandat 2412.943 kb on - strandat 2412.943 kb on - strandat 2412.987 kb on - strandat 2413.074 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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2,410,503 + DvMF_1949 0.64 -0.2
2,410,659 - DvMF_1949 0.81 -0.0
2,410,779 + -0.5
2,410,916 + -0.3
2,411,149 - +0.2
2,411,363 + DvMF_1950 0.20 -1.6
2,411,371 - DvMF_1950 0.21 -0.8
2,411,371 - DvMF_1950 0.21 -1.0
2,411,477 + DvMF_1950 0.31 -0.3
2,411,530 - DvMF_1950 0.36 -0.4
2,412,012 - DvMF_1950 0.84 -0.6
2,412,095 + -0.3
2,412,133 + -0.7
2,412,447 - -0.4
2,412,476 + -0.4
2,412,476 + -0.8
2,412,484 - -0.4
2,412,668 + DvMF_1951 0.50 -0.1
2,412,744 + DvMF_1951 0.81 -0.4
2,412,935 + -0.2
2,412,935 + -1.1
2,412,943 - -0.2
2,412,943 - -0.6
2,412,943 - -0.3
2,412,987 - -0.6
2,413,074 - -0.3

Or see this region's nucleotide sequence