Experiment: MoYLS4 with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1917 and DvMF_1918 are separated by 298 nucleotides DvMF_1918 and DvMF_1919 are separated by 139 nucleotides DvMF_1919 and DvMF_1920 are separated by 12 nucleotides
DvMF_1917: DvMF_1917 - heavy metal translocating P-type ATPase (RefSeq), at 2,362,328 to 2,364,280
_1917
DvMF_1918: DvMF_1918 - extracellular solute-binding protein family 3 (RefSeq), at 2,364,579 to 2,365,325
_1918
DvMF_1919: DvMF_1919 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 2,365,465 to 2,366,136
_1919
DvMF_1920: DvMF_1920 - ABC transporter related (RefSeq), at 2,366,149 to 2,366,898
_1920
Position (kb)
2364
2365
2366 Strain fitness (log2 ratio)
-1
0
1 at 2363.630 kb on + strand, within DvMF_1917 at 2363.730 kb on + strand, within DvMF_1917 at 2364.291 kb on - strand at 2364.296 kb on - strand at 2364.296 kb on - strand at 2364.366 kb on + strand at 2364.854 kb on + strand, within DvMF_1918 at 2365.019 kb on + strand, within DvMF_1918 at 2365.333 kb on - strand at 2365.476 kb on - strand at 2365.596 kb on + strand, within DvMF_1919 at 2365.604 kb on - strand, within DvMF_1919 at 2366.112 kb on + strand at 2366.225 kb on + strand, within DvMF_1920 at 2366.225 kb on + strand, within DvMF_1920 at 2366.233 kb on - strand, within DvMF_1920
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM remove 2,363,630 + DvMF_1917 0.67 -0.1 2,363,730 + DvMF_1917 0.72 +0.1 2,364,291 - -1.4 2,364,296 - -1.5 2,364,296 - -0.0 2,364,366 + -0.4 2,364,854 + DvMF_1918 0.37 +0.3 2,365,019 + DvMF_1918 0.59 +0.2 2,365,333 - +0.1 2,365,476 - +0.1 2,365,596 + DvMF_1919 0.19 -0.6 2,365,604 - DvMF_1919 0.21 +0.4 2,366,112 + +0.3 2,366,225 + DvMF_1920 0.10 +0.3 2,366,225 + DvMF_1920 0.10 +0.2 2,366,233 - DvMF_1920 0.11 +0.0
Or see this region's nucleotide sequence