Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1814

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1813 and DvMF_1814 are separated by 101 nucleotidesDvMF_1814 and DvMF_1815 are separated by 403 nucleotidesDvMF_1815 and DvMF_1816 are separated by 215 nucleotides DvMF_1813: DvMF_1813 - hypothetical protein (RefSeq), at 2,215,176 to 2,215,808 _1813 DvMF_1814: DvMF_1814 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 2,215,910 to 2,216,104 _1814 DvMF_1815: DvMF_1815 - hypothetical protein (RefSeq), at 2,216,508 to 2,216,786 _1815 DvMF_1816: DvMF_1816 - TPR repeat-containing protein (RefSeq), at 2,217,002 to 2,217,328 _1816 Position (kb) 2215 2216 2217Strain fitness (log2 ratio) -1 0 1at 2214.920 kb on - strandat 2214.930 kb on - strandat 2215.092 kb on - strandat 2215.214 kb on - strandat 2215.236 kb on - strandat 2215.283 kb on - strand, within DvMF_1813at 2215.315 kb on + strand, within DvMF_1813at 2215.371 kb on + strand, within DvMF_1813at 2215.628 kb on - strand, within DvMF_1813at 2215.630 kb on + strand, within DvMF_1813at 2215.832 kb on - strandat 2215.902 kb on - strandat 2216.090 kb on - strandat 2216.156 kb on - strandat 2216.184 kb on - strandat 2216.309 kb on - strandat 2216.507 kb on + strandat 2216.547 kb on - strand, within DvMF_1815at 2216.714 kb on + strand, within DvMF_1815at 2216.722 kb on - strand, within DvMF_1815at 2216.740 kb on + strand, within DvMF_1815at 2216.749 kb on + strand, within DvMF_1815at 2216.766 kb on + strandat 2217.000 kb on - strandat 2217.073 kb on - strand, within DvMF_1816

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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2,214,920 - -0.8
2,214,930 - -0.2
2,215,092 - +0.0
2,215,214 - -0.3
2,215,236 - -0.4
2,215,283 - DvMF_1813 0.17 -0.2
2,215,315 + DvMF_1813 0.22 -0.1
2,215,371 + DvMF_1813 0.31 -0.1
2,215,628 - DvMF_1813 0.71 +0.2
2,215,630 + DvMF_1813 0.72 -0.2
2,215,832 - -0.9
2,215,902 - -0.4
2,216,090 - +0.4
2,216,156 - +0.8
2,216,184 - +0.1
2,216,309 - +0.1
2,216,507 + -0.9
2,216,547 - DvMF_1815 0.14 +0.1
2,216,714 + DvMF_1815 0.74 -0.3
2,216,722 - DvMF_1815 0.77 -0.5
2,216,740 + DvMF_1815 0.83 -0.2
2,216,749 + DvMF_1815 0.86 -0.8
2,216,766 + -1.0
2,217,000 - -0.3
2,217,073 - DvMF_1816 0.22 -0.3

Or see this region's nucleotide sequence