Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1173

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1171 and DvMF_1172 are separated by 124 nucleotidesDvMF_1172 and DvMF_1173 are separated by 148 nucleotidesDvMF_1173 and DvMF_1174 are separated by 340 nucleotides DvMF_1171: DvMF_1171 - C_GCAxxG_C_C family protein (RefSeq), at 1,448,325 to 1,449,098 _1171 DvMF_1172: DvMF_1172 - Rhodanese domain protein (RefSeq), at 1,449,223 to 1,449,744 _1172 DvMF_1173: DvMF_1173 - hypothetical protein (RefSeq), at 1,449,893 to 1,450,369 _1173 DvMF_1174: DvMF_1174 - cobalamin (vitamin B12) biosynthesis CbiD protein (RefSeq), at 1,450,710 to 1,452,059 _1174 Position (kb) 1449 1450 1451Strain fitness (log2 ratio) -2 -1 0 1at 1448.919 kb on - strand, within DvMF_1171at 1448.971 kb on - strand, within DvMF_1171at 1449.000 kb on + strand, within DvMF_1171at 1449.244 kb on + strandat 1449.244 kb on + strandat 1449.252 kb on - strandat 1449.252 kb on - strandat 1449.299 kb on - strand, within DvMF_1172at 1449.346 kb on - strand, within DvMF_1172at 1449.649 kb on - strand, within DvMF_1172at 1449.687 kb on + strand, within DvMF_1172at 1449.695 kb on - strandat 1449.952 kb on + strand, within DvMF_1173at 1449.960 kb on - strand, within DvMF_1173at 1450.004 kb on + strand, within DvMF_1173at 1450.200 kb on - strand, within DvMF_1173at 1450.872 kb on - strand, within DvMF_1174at 1451.043 kb on - strand, within DvMF_1174at 1451.337 kb on - strand, within DvMF_1174

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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1,448,919 - DvMF_1171 0.77 -0.2
1,448,971 - DvMF_1171 0.83 -0.3
1,449,000 + DvMF_1171 0.87 -1.7
1,449,244 + -0.5
1,449,244 + -0.6
1,449,252 - +0.2
1,449,252 - -0.1
1,449,299 - DvMF_1172 0.15 -0.2
1,449,346 - DvMF_1172 0.24 -0.3
1,449,649 - DvMF_1172 0.82 -0.2
1,449,687 + DvMF_1172 0.89 -0.3
1,449,695 - -0.5
1,449,952 + DvMF_1173 0.12 -0.5
1,449,960 - DvMF_1173 0.14 -0.7
1,450,004 + DvMF_1173 0.23 -0.5
1,450,200 - DvMF_1173 0.64 +0.0
1,450,872 - DvMF_1174 0.12 -0.1
1,451,043 - DvMF_1174 0.25 -2.7
1,451,337 - DvMF_1174 0.46 -2.6

Or see this region's nucleotide sequence