Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_R0028

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0984 and DvMF_R0028 are separated by 89 nucleotidesDvMF_R0028 and DvMF_0985 are separated by 965 nucleotides DvMF_0984: DvMF_0984 - threonyl-tRNA synthetase (RefSeq), at 1,192,037 to 1,193,971 _0984 DvMF_R0028: DvMF_R0028 - tRNA-Val (RefSeq), at 1,194,061 to 1,194,135 _R0028 DvMF_0985: DvMF_0985 - K potassium transporter (RefSeq), at 1,195,101 to 1,197,143 _0985 Position (kb) 1194 1195Strain fitness (log2 ratio) -1 0 1at 1194.725 kb on + strandat 1194.739 kb on + strandat 1194.896 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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1,194,725 + +0.3
1,194,739 + -1.1
1,194,896 - +0.5

Or see this region's nucleotide sequence