Experiment: MoYLS4 with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0840 and DvMF_0841 are separated by 75 nucleotides DvMF_0841 and DvMF_0842 are separated by 165 nucleotides DvMF_0842 and DvMF_0843 are separated by 154 nucleotides
DvMF_0840: DvMF_0840 - glycogen branching enzyme (RefSeq), at 1,014,472 to 1,016,403
_0840
DvMF_0841: DvMF_0841 - glycogen/starch synthase, ADP-glucose type (RefSeq), at 1,016,479 to 1,017,945
_0841
DvMF_0842: DvMF_0842 - NUDIX hydrolase (RefSeq), at 1,018,111 to 1,018,641
_0842
DvMF_0843: DvMF_0843 - glycosyl transferase family 9 (RefSeq), at 1,018,796 to 1,020,058
_0843
Position (kb)
1016
1017
1018 Strain fitness (log2 ratio)
-2
-1
0
1 at 1015.502 kb on - strand, within DvMF_0840 at 1015.509 kb on + strand, within DvMF_0840 at 1015.530 kb on + strand, within DvMF_0840 at 1015.733 kb on + strand, within DvMF_0840 at 1015.765 kb on - strand, within DvMF_0840 at 1015.833 kb on + strand, within DvMF_0840 at 1016.069 kb on - strand, within DvMF_0840 at 1016.296 kb on - strand at 1016.338 kb on + strand at 1016.463 kb on - strand at 1016.670 kb on - strand, within DvMF_0841 at 1016.942 kb on - strand, within DvMF_0841 at 1016.951 kb on - strand, within DvMF_0841 at 1017.117 kb on - strand, within DvMF_0841 at 1017.397 kb on + strand, within DvMF_0841 at 1017.760 kb on - strand, within DvMF_0841 at 1017.860 kb on - strand at 1017.888 kb on - strand at 1018.190 kb on + strand, within DvMF_0842 at 1018.191 kb on - strand, within DvMF_0842 at 1018.217 kb on + strand, within DvMF_0842 at 1018.337 kb on + strand, within DvMF_0842 at 1018.345 kb on - strand, within DvMF_0842 at 1018.353 kb on + strand, within DvMF_0842 at 1018.430 kb on - strand, within DvMF_0842 at 1018.574 kb on - strand, within DvMF_0842 at 1018.830 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM remove 1,015,502 - DvMF_0840 0.53 -1.3 1,015,509 + DvMF_0840 0.54 -1.1 1,015,530 + DvMF_0840 0.55 -0.3 1,015,733 + DvMF_0840 0.65 -1.4 1,015,765 - DvMF_0840 0.67 -0.4 1,015,833 + DvMF_0840 0.70 -1.6 1,016,069 - DvMF_0840 0.83 -1.4 1,016,296 - -1.6 1,016,338 + -1.4 1,016,463 - -0.0 1,016,670 - DvMF_0841 0.13 -0.9 1,016,942 - DvMF_0841 0.32 -2.0 1,016,951 - DvMF_0841 0.32 -1.4 1,017,117 - DvMF_0841 0.43 -1.6 1,017,397 + DvMF_0841 0.63 -2.4 1,017,760 - DvMF_0841 0.87 -0.9 1,017,860 - -1.1 1,017,888 - -2.4 1,018,190 + DvMF_0842 0.15 -0.4 1,018,191 - DvMF_0842 0.15 +0.1 1,018,217 + DvMF_0842 0.20 -0.5 1,018,337 + DvMF_0842 0.43 -0.1 1,018,345 - DvMF_0842 0.44 -1.0 1,018,353 + DvMF_0842 0.46 -0.9 1,018,430 - DvMF_0842 0.60 -0.3 1,018,574 - DvMF_0842 0.87 -0.2 1,018,830 - -0.4
Or see this region's nucleotide sequence