Experiment: MoYLS4 with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0643 and DvMF_0644 are separated by 10 nucleotides DvMF_0644 and DvMF_0645 are separated by 292 nucleotides DvMF_0645 and DvMF_0646 are separated by 744 nucleotides
DvMF_0643: DvMF_0643 - formate dehydrogenase, alpha subunit (RefSeq), at 770,931 to 773,969
_0643
DvMF_0644: DvMF_0644 - formate dehydrogenase, beta subunit, putative (RefSeq), at 773,980 to 774,627
_0644
DvMF_0645: DvMF_0645 - formate dehydrogenase accessory protein (RefSeq), at 774,920 to 775,933
_0645
DvMF_0646: DvMF_0646 - formate dehydrogenase, alpha subunit (RefSeq), at 776,678 to 779,719
_0646
Position (kb) 774
775
776 Strain fitness (log2 ratio) -1
0
1 at 774.003 kb on + strand at 774.026 kb on + strand at 774.132 kb on + strand, within DvMF_0644 at 774.164 kb on - strand, within DvMF_0644 at 774.285 kb on + strand, within DvMF_0644 at 774.293 kb on - strand, within DvMF_0644 at 774.742 kb on + strand at 774.974 kb on + strand at 775.193 kb on - strand, within DvMF_0645 at 775.193 kb on - strand, within DvMF_0645 at 775.231 kb on - strand, within DvMF_0645 at 775.680 kb on + strand, within DvMF_0645 at 775.680 kb on + strand, within DvMF_0645 at 775.868 kb on - strand at 776.504 kb on + strand at 776.656 kb on + strand at 776.707 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM remove 774,003 + -0.5 774,026 + -0.6 774,132 + DvMF_0644 0.23 -0.3 774,164 - DvMF_0644 0.28 -0.5 774,285 + DvMF_0644 0.47 -0.5 774,293 - DvMF_0644 0.48 -0.8 774,742 + -0.5 774,974 + -0.4 775,193 - DvMF_0645 0.27 -0.9 775,193 - DvMF_0645 0.27 +0.2 775,231 - DvMF_0645 0.31 +0.4 775,680 + DvMF_0645 0.75 -0.4 775,680 + DvMF_0645 0.75 +0.5 775,868 - +0.1 776,504 + -0.5 776,656 + -0.5 776,707 + +0.1
Or see this region's nucleotide sequence