Experiment: MoYLS4 with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0629 and DvMF_0630 overlap by 14 nucleotides DvMF_0630 and DvMF_0631 overlap by 4 nucleotides DvMF_0631 and DvMF_0632 are separated by 446 nucleotides DvMF_0632 and DvMF_0633 are separated by 146 nucleotides
DvMF_0629: DvMF_0629 - protein of unknown function DUF214 (RefSeq), at 751,411 to 752,562
_0629
DvMF_0630: DvMF_0630 - ABC transporter related (RefSeq), at 752,549 to 753,355
_0630
DvMF_0631: DvMF_0631 - efflux transporter, RND family, MFP subunit (RefSeq), at 753,352 to 754,650
_0631
DvMF_0632: DvMF_0632 - hypothetical protein (RefSeq), at 755,097 to 755,330
_0632
DvMF_0633: DvMF_0633 - Phosphoglycerate mutase (RefSeq), at 755,477 to 756,460
_0633
Position (kb) 753
754
755 Strain fitness (log2 ratio) -1
0
1 at 752.491 kb on + strand at 752.628 kb on - strand at 752.808 kb on + strand, within DvMF_0630 at 752.816 kb on - strand, within DvMF_0630 at 752.851 kb on - strand, within DvMF_0630 at 752.933 kb on - strand, within DvMF_0630 at 753.005 kb on + strand, within DvMF_0630 at 753.074 kb on - strand, within DvMF_0630 at 753.188 kb on + strand, within DvMF_0630 at 753.486 kb on + strand, within DvMF_0631 at 753.654 kb on + strand, within DvMF_0631 at 753.894 kb on + strand, within DvMF_0631 at 754.075 kb on + strand, within DvMF_0631 at 754.210 kb on + strand, within DvMF_0631 at 754.276 kb on + strand, within DvMF_0631 at 754.389 kb on + strand, within DvMF_0631 at 754.430 kb on + strand, within DvMF_0631 at 754.563 kb on - strand at 754.737 kb on + strand at 755.021 kb on + strand at 755.088 kb on + strand at 755.089 kb on - strand at 755.350 kb on + strand at 755.391 kb on - strand at 755.596 kb on + strand, within DvMF_0633 at 755.625 kb on - strand, within DvMF_0633
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM remove 752,491 + -0.5 752,628 - -0.6 752,808 + DvMF_0630 0.32 -0.1 752,816 - DvMF_0630 0.33 -0.5 752,851 - DvMF_0630 0.37 -1.7 752,933 - DvMF_0630 0.48 -0.1 753,005 + DvMF_0630 0.57 -1.2 753,074 - DvMF_0630 0.65 -0.6 753,188 + DvMF_0630 0.79 -0.2 753,486 + DvMF_0631 0.10 -0.4 753,654 + DvMF_0631 0.23 -0.6 753,894 + DvMF_0631 0.42 -0.9 754,075 + DvMF_0631 0.56 -1.1 754,210 + DvMF_0631 0.66 -0.5 754,276 + DvMF_0631 0.71 -0.5 754,389 + DvMF_0631 0.80 -0.1 754,430 + DvMF_0631 0.83 +0.0 754,563 - -0.9 754,737 + -0.3 755,021 + -0.3 755,088 + +0.1 755,089 - +0.1 755,350 + +0.7 755,391 - -0.2 755,596 + DvMF_0633 0.12 -0.6 755,625 - DvMF_0633 0.15 -0.0
Or see this region's nucleotide sequence