Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0594

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0593 and DvMF_0594 are separated by 143 nucleotidesDvMF_0594 and DvMF_0595 are separated by 369 nucleotides DvMF_0593: DvMF_0593 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 704,411 to 705,748 _0593 DvMF_0594: DvMF_0594 - intracellular protease, PfpI family (RefSeq), at 705,892 to 706,416 _0594 DvMF_0595: DvMF_0595 - phosphonate ABC transporter, inner membrane subunit (RefSeq), at 706,786 to 707,580 _0595 Position (kb) 705 706 707Strain fitness (log2 ratio) -2 -1 0 1at 705.709 kb on - strandat 706.015 kb on - strand, within DvMF_0594at 706.020 kb on - strand, within DvMF_0594at 706.293 kb on - strand, within DvMF_0594at 706.418 kb on + strandat 706.426 kb on - strandat 706.544 kb on + strandat 706.756 kb on - strandat 707.198 kb on + strand, within DvMF_0595at 707.243 kb on - strand, within DvMF_0595at 707.303 kb on + strand, within DvMF_0595at 707.322 kb on - strand, within DvMF_0595

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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705,709 - -0.6
706,015 - DvMF_0594 0.23 -0.3
706,020 - DvMF_0594 0.24 -0.4
706,293 - DvMF_0594 0.76 -0.4
706,418 + -0.9
706,426 - -0.1
706,544 + -0.8
706,756 - -0.3
707,198 + DvMF_0595 0.52 -1.0
707,243 - DvMF_0595 0.57 -2.3
707,303 + DvMF_0595 0.65 -0.3
707,322 - DvMF_0595 0.67 +0.0

Or see this region's nucleotide sequence