Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0528

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0527 and DvMF_0528 are separated by 67 nucleotidesDvMF_0528 and DvMF_0529 are separated by 250 nucleotides DvMF_0527: DvMF_0527 - 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase (RefSeq), at 622,429 to 623,181 _0527 DvMF_0528: DvMF_0528 - protein of unknown function DUF111 (RefSeq), at 623,249 to 624,748 _0528 DvMF_0529: DvMF_0529 - aldo/keto reductase (RefSeq), at 624,999 to 626,201 _0529 Position (kb) 623 624 625Strain fitness (log2 ratio) -1 0 1at 622.372 kb on - strandat 623.111 kb on + strandat 623.119 kb on - strandat 623.836 kb on + strand, within DvMF_0528at 624.376 kb on + strand, within DvMF_0528at 624.465 kb on - strand, within DvMF_0528at 624.779 kb on - strandat 625.122 kb on - strand, within DvMF_0529at 625.392 kb on + strand, within DvMF_0529at 625.566 kb on + strand, within DvMF_0529at 625.610 kb on + strand, within DvMF_0529at 625.618 kb on + strand, within DvMF_0529at 625.618 kb on - strand, within DvMF_0529at 625.618 kb on - strand, within DvMF_0529at 625.685 kb on + strand, within DvMF_0529

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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622,372 - +1.3
623,111 + -0.4
623,119 - -0.4
623,836 + DvMF_0528 0.39 -0.5
624,376 + DvMF_0528 0.75 -0.5
624,465 - DvMF_0528 0.81 -0.7
624,779 - +0.5
625,122 - DvMF_0529 0.10 -0.6
625,392 + DvMF_0529 0.33 -0.2
625,566 + DvMF_0529 0.47 -0.5
625,610 + DvMF_0529 0.51 +0.5
625,618 + DvMF_0529 0.51 -0.2
625,618 - DvMF_0529 0.51 -0.5
625,618 - DvMF_0529 0.51 +1.6
625,685 + DvMF_0529 0.57 -0.6

Or see this region's nucleotide sequence