Experiment: MoYLS4 with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ksgA and DvMF_0502 are separated by 197 nucleotides DvMF_0502 and DvMF_0503 are separated by 57 nucleotides DvMF_0503 and DvMF_0504 are separated by 133 nucleotides
DvMF_0501: ksgA - dimethyladenosine transferase (RefSeq), at 587,835 to 588,647
ksgA
DvMF_0502: DvMF_0502 - hypothetical protein (RefSeq), at 588,845 to 589,477
_0502
DvMF_0503: DvMF_0503 - elongation factor G (RefSeq), at 589,535 to 591,631
_0503
DvMF_0504: DvMF_0504 - hypothetical protein (RefSeq), at 591,765 to 592,781
_0504
Position (kb) 589
590
591
592 Strain fitness (log2 ratio) -2
-1
0
1 at 588.792 kb on + strand at 589.392 kb on - strand, within DvMF_0502 at 589.458 kb on + strand at 589.491 kb on + strand at 589.662 kb on - strand at 589.788 kb on + strand, within DvMF_0503 at 589.788 kb on + strand, within DvMF_0503 at 589.796 kb on - strand, within DvMF_0503 at 589.796 kb on - strand, within DvMF_0503 at 589.796 kb on - strand, within DvMF_0503 at 589.806 kb on - strand, within DvMF_0503 at 589.902 kb on + strand, within DvMF_0503 at 589.908 kb on + strand, within DvMF_0503 at 589.910 kb on - strand, within DvMF_0503 at 589.915 kb on - strand, within DvMF_0503 at 589.915 kb on - strand, within DvMF_0503 at 589.916 kb on - strand, within DvMF_0503 at 589.938 kb on + strand, within DvMF_0503 at 590.129 kb on - strand, within DvMF_0503 at 590.156 kb on + strand, within DvMF_0503 at 590.231 kb on + strand, within DvMF_0503 at 590.400 kb on + strand, within DvMF_0503 at 590.418 kb on - strand, within DvMF_0503 at 590.684 kb on + strand, within DvMF_0503 at 590.692 kb on - strand, within DvMF_0503 at 590.696 kb on + strand, within DvMF_0503 at 590.783 kb on - strand, within DvMF_0503 at 590.925 kb on - strand, within DvMF_0503 at 591.161 kb on - strand, within DvMF_0503 at 591.292 kb on - strand, within DvMF_0503 at 591.376 kb on - strand, within DvMF_0503 at 591.441 kb on + strand at 591.509 kb on - strand at 591.548 kb on - strand at 591.701 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM remove 588,792 + -2.2 589,392 - DvMF_0502 0.86 -0.1 589,458 + -0.4 589,491 + -0.1 589,662 - -1.0 589,788 + DvMF_0503 0.12 -1.2 589,788 + DvMF_0503 0.12 -0.5 589,796 - DvMF_0503 0.12 +0.1 589,796 - DvMF_0503 0.12 +0.0 589,796 - DvMF_0503 0.12 -0.7 589,806 - DvMF_0503 0.13 -0.7 589,902 + DvMF_0503 0.18 -0.3 589,908 + DvMF_0503 0.18 -0.4 589,910 - DvMF_0503 0.18 -0.4 589,915 - DvMF_0503 0.18 -0.2 589,915 - DvMF_0503 0.18 -0.6 589,916 - DvMF_0503 0.18 -0.4 589,938 + DvMF_0503 0.19 -0.1 590,129 - DvMF_0503 0.28 +0.5 590,156 + DvMF_0503 0.30 -0.8 590,231 + DvMF_0503 0.33 +0.1 590,400 + DvMF_0503 0.41 -0.8 590,418 - DvMF_0503 0.42 +0.5 590,684 + DvMF_0503 0.55 -0.1 590,692 - DvMF_0503 0.55 -0.3 590,696 + DvMF_0503 0.55 -0.3 590,783 - DvMF_0503 0.60 -0.3 590,925 - DvMF_0503 0.66 +1.2 591,161 - DvMF_0503 0.78 -0.2 591,292 - DvMF_0503 0.84 -0.4 591,376 - DvMF_0503 0.88 -0.3 591,441 + -1.2 591,509 - -1.0 591,548 - -0.5 591,701 - -0.4
Or see this region's nucleotide sequence