Experiment: MoYLS4 with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0355 and DvMF_0356 are separated by 461 nucleotides DvMF_0356 and DvMF_0357 are separated by 12 nucleotides
DvMF_0355: DvMF_0355 - DNA mismatch repair protein MutS (RefSeq), at 412,711 to 415,443
_0355
DvMF_0356: DvMF_0356 - Tetratricopeptide TPR_4 (RefSeq), at 415,905 to 417,113
_0356
DvMF_0357: DvMF_0357 - histidine triad (HIT) protein (RefSeq), at 417,126 to 418,022
_0357
Position (kb) 415
416
417
418 Strain fitness (log2 ratio) -2
-1
0
1 at 414.908 kb on + strand, within DvMF_0355 at 414.932 kb on + strand, within DvMF_0355 at 415.064 kb on + strand, within DvMF_0355 at 415.064 kb on + strand, within DvMF_0355 at 415.072 kb on - strand, within DvMF_0355 at 415.107 kb on + strand, within DvMF_0355 at 415.125 kb on - strand, within DvMF_0355 at 415.212 kb on + strand at 415.298 kb on - strand at 415.312 kb on + strand at 415.441 kb on + strand at 415.746 kb on - strand at 415.819 kb on + strand at 415.827 kb on - strand at 415.827 kb on - strand at 415.893 kb on + strand at 415.901 kb on - strand at 415.972 kb on - strand at 415.974 kb on - strand at 416.237 kb on + strand, within DvMF_0356 at 416.415 kb on - strand, within DvMF_0356 at 416.508 kb on - strand, within DvMF_0356 at 416.508 kb on - strand, within DvMF_0356 at 416.554 kb on + strand, within DvMF_0356 at 416.562 kb on - strand, within DvMF_0356 at 416.598 kb on + strand, within DvMF_0356 at 416.722 kb on - strand, within DvMF_0356 at 416.880 kb on + strand, within DvMF_0356 at 416.989 kb on - strand, within DvMF_0356 at 417.089 kb on + strand at 417.097 kb on - strand at 417.099 kb on + strand at 417.603 kb on - strand, within DvMF_0357 at 417.603 kb on - strand, within DvMF_0357 at 417.760 kb on + strand, within DvMF_0357 at 417.766 kb on + strand, within DvMF_0357 at 417.844 kb on + strand, within DvMF_0357 at 417.869 kb on - strand, within DvMF_0357 at 417.914 kb on - strand, within DvMF_0357 at 417.914 kb on - strand, within DvMF_0357
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM remove 414,908 + DvMF_0355 0.80 -0.3 414,932 + DvMF_0355 0.81 -0.9 415,064 + DvMF_0355 0.86 -0.7 415,064 + DvMF_0355 0.86 -0.1 415,072 - DvMF_0355 0.86 +0.9 415,107 + DvMF_0355 0.88 -0.9 415,125 - DvMF_0355 0.88 -0.5 415,212 + -0.4 415,298 - -2.2 415,312 + -1.2 415,441 + +0.1 415,746 - -0.4 415,819 + -1.5 415,827 - -0.4 415,827 - -0.4 415,893 + -0.1 415,901 - -0.6 415,972 - -0.2 415,974 - -0.3 416,237 + DvMF_0356 0.27 -0.0 416,415 - DvMF_0356 0.42 -0.3 416,508 - DvMF_0356 0.50 -0.4 416,508 - DvMF_0356 0.50 -1.1 416,554 + DvMF_0356 0.54 -0.5 416,562 - DvMF_0356 0.54 -0.6 416,598 + DvMF_0356 0.57 -0.2 416,722 - DvMF_0356 0.68 +0.6 416,880 + DvMF_0356 0.81 -0.1 416,989 - DvMF_0356 0.90 -0.3 417,089 + -0.9 417,097 - -0.1 417,099 + -0.1 417,603 - DvMF_0357 0.53 -0.9 417,603 - DvMF_0357 0.53 -0.4 417,760 + DvMF_0357 0.71 -0.1 417,766 + DvMF_0357 0.71 -1.3 417,844 + DvMF_0357 0.80 +1.2 417,869 - DvMF_0357 0.83 -1.2 417,914 - DvMF_0357 0.88 -1.2 417,914 - DvMF_0357 0.88 -0.4
Or see this region's nucleotide sequence