Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0263

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0261 and DvMF_0262 are separated by 501 nucleotidesDvMF_0262 and DvMF_0263 are separated by 33 nucleotidesDvMF_0263 and DvMF_0264 are separated by 98 nucleotidesDvMF_0264 and DvMF_0265 are separated by 28 nucleotidesDvMF_0265 and ileS are separated by 117 nucleotides DvMF_0261: DvMF_0261 - putative chemotaxis phosphatase, CheZ (RefSeq), at 299,020 to 299,766 _0261 DvMF_0262: DvMF_0262 - Homocysteine formation from aspartate semialdehyde (NIL/ferredoxin component) (from data), at 300,268 to 300,711 _0262 DvMF_0263: DvMF_0263 - tol-pal system protein YbgF (RefSeq), at 300,745 to 301,746 _0263 DvMF_0264: DvMF_0264 - hypothetical protein (RefSeq), at 301,845 to 302,039 _0264 DvMF_0265: DvMF_0265 - lipoprotein signal peptidase (RefSeq), at 302,068 to 302,568 _0265 DvMF_0266: ileS - isoleucyl-tRNA synthetase (RefSeq), at 302,686 to 305,502 ileS Position (kb) 300 301 302Strain fitness (log2 ratio) -2 -1 0 1at 299.770 kb on - strandat 299.938 kb on + strandat 299.938 kb on + strandat 299.983 kb on - strandat 300.141 kb on - strandat 300.256 kb on - strandat 300.311 kb on + strandat 300.328 kb on - strand, within DvMF_0262at 300.521 kb on - strand, within DvMF_0262at 300.606 kb on + strand, within DvMF_0262at 300.689 kb on + strandat 301.781 kb on + strandat 301.806 kb on + strandat 302.025 kb on - strandat 302.064 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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299,770 - -0.1
299,938 + -0.7
299,938 + -0.4
299,983 - +0.2
300,141 - -0.7
300,256 - -0.2
300,311 + -2.4
300,328 - DvMF_0262 0.14 -0.6
300,521 - DvMF_0262 0.57 -1.4
300,606 + DvMF_0262 0.76 -0.8
300,689 + -0.2
301,781 + +1.7
301,806 + -0.5
302,025 - +0.3
302,064 - +0.1

Or see this region's nucleotide sequence