Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0201

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0200 and DvMF_0201 are separated by 189 nucleotidesDvMF_0201 and DvMF_0202 are separated by 88 nucleotides DvMF_0200: DvMF_0200 - Radical SAM domain protein (RefSeq), at 217,942 to 219,102 _0200 DvMF_0201: DvMF_0201 - hypothetical protein (RefSeq), at 219,292 to 219,768 _0201 DvMF_0202: DvMF_0202 - phosphoribosylaminoimidazole synthetase (RefSeq), at 219,857 to 220,909 _0202 Position (kb) 219 220Strain fitness (log2 ratio) -3 -2 -1 0 1at 218.308 kb on - strand, within DvMF_0200at 218.377 kb on - strand, within DvMF_0200at 218.396 kb on + strand, within DvMF_0200at 218.764 kb on - strand, within DvMF_0200at 218.847 kb on - strand, within DvMF_0200at 218.852 kb on + strand, within DvMF_0200at 218.852 kb on + strand, within DvMF_0200at 218.860 kb on - strand, within DvMF_0200at 218.995 kb on - strandat 219.184 kb on + strandat 219.325 kb on + strandat 219.333 kb on - strandat 219.886 kb on - strandat 219.958 kb on + strandat 220.270 kb on + strand, within DvMF_0202

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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218,308 - DvMF_0200 0.32 -0.7
218,377 - DvMF_0200 0.37 -0.1
218,396 + DvMF_0200 0.39 -0.1
218,764 - DvMF_0200 0.71 -0.3
218,847 - DvMF_0200 0.78 +0.0
218,852 + DvMF_0200 0.78 -0.6
218,852 + DvMF_0200 0.78 -1.0
218,860 - DvMF_0200 0.79 +0.2
218,995 - -1.3
219,184 + +0.1
219,325 + -1.2
219,333 - -0.3
219,886 - -3.0
219,958 + -2.0
220,270 + DvMF_0202 0.39 -2.0

Or see this region's nucleotide sequence