Experiment: MoYLS4 with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0197 and DvMF_0198 are separated by 383 nucleotides DvMF_0198 and DvMF_0199 are separated by 114 nucleotides DvMF_0199 and DvMF_0200 overlap by 1 nucleotides
DvMF_0197: DvMF_0197 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 215,142 to 216,617
_0197
DvMF_0198: DvMF_0198 - hypothetical protein (RefSeq), at 217,001 to 217,324
_0198
DvMF_0199: DvMF_0199 - ATP:corrinoid adenosyltransferase BtuR/CobO/CobP (RefSeq), at 217,439 to 217,942
_0199
DvMF_0200: DvMF_0200 - Radical SAM domain protein (RefSeq), at 217,942 to 219,102
_0200
Position (kb) 217
218 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 216.587 kb on + strand at 216.668 kb on - strand at 216.967 kb on - strand at 217.271 kb on + strand, within DvMF_0198 at 217.271 kb on + strand, within DvMF_0198 at 217.271 kb on + strand, within DvMF_0198 at 217.271 kb on + strand, within DvMF_0198 at 217.271 kb on + strand, within DvMF_0198 at 217.279 kb on - strand, within DvMF_0198 at 217.279 kb on - strand, within DvMF_0198 at 217.429 kb on + strand at 217.653 kb on - strand, within DvMF_0199 at 217.716 kb on + strand, within DvMF_0199 at 217.724 kb on - strand, within DvMF_0199 at 218.308 kb on - strand, within DvMF_0200 at 218.377 kb on - strand, within DvMF_0200 at 218.396 kb on + strand, within DvMF_0200 at 218.764 kb on - strand, within DvMF_0200 at 218.847 kb on - strand, within DvMF_0200 at 218.852 kb on + strand, within DvMF_0200 at 218.852 kb on + strand, within DvMF_0200 at 218.860 kb on - strand, within DvMF_0200
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM remove 216,587 + -0.2 216,668 - -0.2 216,967 - -0.2 217,271 + DvMF_0198 0.83 -0.6 217,271 + DvMF_0198 0.83 -0.5 217,271 + DvMF_0198 0.83 -0.2 217,271 + DvMF_0198 0.83 -0.2 217,271 + DvMF_0198 0.83 +0.2 217,279 - DvMF_0198 0.86 -0.2 217,279 - DvMF_0198 0.86 -0.3 217,429 + +1.5 217,653 - DvMF_0199 0.42 -2.4 217,716 + DvMF_0199 0.55 -2.9 217,724 - DvMF_0199 0.57 -2.5 218,308 - DvMF_0200 0.32 -0.7 218,377 - DvMF_0200 0.37 -0.1 218,396 + DvMF_0200 0.39 -0.1 218,764 - DvMF_0200 0.71 -0.3 218,847 - DvMF_0200 0.78 +0.0 218,852 + DvMF_0200 0.78 -0.6 218,852 + DvMF_0200 0.78 -1.0 218,860 - DvMF_0200 0.79 +0.2
Or see this region's nucleotide sequence