Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0036

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0035 and DvMF_0036 are separated by 30 nucleotidesDvMF_0036 and DvMF_0037 are separated by 2 nucleotidesDvMF_0037 and DvMF_0038 are separated by 126 nucleotides DvMF_0035: DvMF_0035 - efflux transporter, RND family, MFP subunit (RefSeq), at 45,068 to 46,282 _0035 DvMF_0036: DvMF_0036 - transporter, hydrophobe/amphiphile efflux-1 (HAE1) family (RefSeq), at 46,313 to 49,459 _0036 DvMF_0037: DvMF_0037 - hypothetical protein (RefSeq), at 49,462 to 50,142 _0037 DvMF_0038: DvMF_0038 - protein of unknown function DUF140 (RefSeq), at 50,269 to 51,414 _0038 Position (kb) 46 47 48 49 50Strain fitness (log2 ratio) -2 -1 0 1at 45.369 kb on + strand, within DvMF_0035at 45.389 kb on + strand, within DvMF_0035at 45.495 kb on - strand, within DvMF_0035at 45.756 kb on - strand, within DvMF_0035at 45.807 kb on + strand, within DvMF_0035at 45.807 kb on + strand, within DvMF_0035at 45.807 kb on + strand, within DvMF_0035at 45.815 kb on - strand, within DvMF_0035at 45.979 kb on - strand, within DvMF_0035at 46.063 kb on + strand, within DvMF_0035at 46.103 kb on + strand, within DvMF_0035at 46.164 kb on - strandat 46.171 kb on - strandat 46.221 kb on + strandat 46.519 kb on + strandat 46.583 kb on - strandat 46.634 kb on + strand, within DvMF_0036at 47.148 kb on + strand, within DvMF_0036at 47.156 kb on - strand, within DvMF_0036at 47.345 kb on + strand, within DvMF_0036at 47.357 kb on - strand, within DvMF_0036at 47.367 kb on - strand, within DvMF_0036at 47.430 kb on + strand, within DvMF_0036at 47.463 kb on + strand, within DvMF_0036at 47.510 kb on - strand, within DvMF_0036at 47.517 kb on + strand, within DvMF_0036at 47.525 kb on - strand, within DvMF_0036at 47.638 kb on - strand, within DvMF_0036at 47.663 kb on - strand, within DvMF_0036at 47.761 kb on + strand, within DvMF_0036at 47.894 kb on + strand, within DvMF_0036at 48.019 kb on - strand, within DvMF_0036at 48.152 kb on + strand, within DvMF_0036at 48.339 kb on + strand, within DvMF_0036at 48.353 kb on + strand, within DvMF_0036at 48.361 kb on - strand, within DvMF_0036at 48.462 kb on - strand, within DvMF_0036at 48.496 kb on - strand, within DvMF_0036at 48.496 kb on - strand, within DvMF_0036at 48.513 kb on - strand, within DvMF_0036at 48.529 kb on - strand, within DvMF_0036at 48.529 kb on - strand, within DvMF_0036at 48.546 kb on - strand, within DvMF_0036at 48.546 kb on - strand, within DvMF_0036at 48.937 kb on - strand, within DvMF_0036at 49.459 kb on + strandat 49.531 kb on + strand, within DvMF_0037at 49.600 kb on + strand, within DvMF_0037at 49.644 kb on + strand, within DvMF_0037at 49.660 kb on + strand, within DvMF_0037at 49.709 kb on - strand, within DvMF_0037at 49.822 kb on - strand, within DvMF_0037at 49.836 kb on + strand, within DvMF_0037at 49.860 kb on + strand, within DvMF_0037at 49.946 kb on - strand, within DvMF_0037at 50.114 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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45,369 + DvMF_0035 0.25 -0.6
45,389 + DvMF_0035 0.26 +0.1
45,495 - DvMF_0035 0.35 +0.1
45,756 - DvMF_0035 0.57 -0.1
45,807 + DvMF_0035 0.61 -0.2
45,807 + DvMF_0035 0.61 -0.2
45,807 + DvMF_0035 0.61 -0.5
45,815 - DvMF_0035 0.61 -1.8
45,979 - DvMF_0035 0.75 -0.7
46,063 + DvMF_0035 0.82 -0.3
46,103 + DvMF_0035 0.85 -0.8
46,164 - -0.7
46,171 - -1.3
46,221 + +0.5
46,519 + +0.0
46,583 - -1.1
46,634 + DvMF_0036 0.10 -1.1
47,148 + DvMF_0036 0.27 +0.2
47,156 - DvMF_0036 0.27 -0.9
47,345 + DvMF_0036 0.33 -1.0
47,357 - DvMF_0036 0.33 -0.5
47,367 - DvMF_0036 0.33 -0.2
47,430 + DvMF_0036 0.35 -0.6
47,463 + DvMF_0036 0.37 -1.0
47,510 - DvMF_0036 0.38 -0.3
47,517 + DvMF_0036 0.38 -0.5
47,525 - DvMF_0036 0.39 -1.5
47,638 - DvMF_0036 0.42 -0.5
47,663 - DvMF_0036 0.43 -0.2
47,761 + DvMF_0036 0.46 -0.2
47,894 + DvMF_0036 0.50 -2.0
48,019 - DvMF_0036 0.54 -0.2
48,152 + DvMF_0036 0.58 -0.4
48,339 + DvMF_0036 0.64 -2.4
48,353 + DvMF_0036 0.65 +0.5
48,361 - DvMF_0036 0.65 -1.2
48,462 - DvMF_0036 0.68 +0.6
48,496 - DvMF_0036 0.69 -1.0
48,496 - DvMF_0036 0.69 -0.3
48,513 - DvMF_0036 0.70 -0.7
48,529 - DvMF_0036 0.70 -1.5
48,529 - DvMF_0036 0.70 +0.0
48,546 - DvMF_0036 0.71 -0.4
48,546 - DvMF_0036 0.71 -0.4
48,937 - DvMF_0036 0.83 +0.4
49,459 + -1.1
49,531 + DvMF_0037 0.10 -0.3
49,600 + DvMF_0037 0.20 -0.5
49,644 + DvMF_0037 0.27 -0.9
49,660 + DvMF_0037 0.29 -0.8
49,709 - DvMF_0037 0.36 +0.5
49,822 - DvMF_0037 0.53 +0.0
49,836 + DvMF_0037 0.55 -1.2
49,860 + DvMF_0037 0.58 -1.1
49,946 - DvMF_0037 0.71 +0.0
50,114 + -0.1

Or see this region's nucleotide sequence