Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3690 and Shewana3_3691 are separated by 278 nucleotides Shewana3_3691 and Shewana3_3692 are separated by 60 nucleotides
Shewana3_3690: Shewana3_3690 - cytochrome c, putative (RefSeq), at 4,429,973 to 4,431,361
_3690
Shewana3_3691: Shewana3_3691 - sulphate transporter (RefSeq), at 4,431,640 to 4,432,800
_3691
Shewana3_3692: Shewana3_3692 - polysaccharide deacetylase (RefSeq), at 4,432,861 to 4,433,865
_3692
Position (kb) 4431
4432
4433 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 4430.916 kb on - strand, within Shewana3_3690 at 4430.962 kb on + strand, within Shewana3_3690 at 4430.962 kb on + strand, within Shewana3_3690 at 4430.987 kb on - strand, within Shewana3_3690 at 4431.017 kb on - strand, within Shewana3_3690 at 4431.307 kb on - strand at 4431.355 kb on + strand at 4431.355 kb on + strand at 4431.511 kb on - strand at 4431.747 kb on - strand at 4431.753 kb on - strand at 4431.886 kb on + strand, within Shewana3_3691 at 4431.893 kb on + strand, within Shewana3_3691 at 4431.901 kb on - strand, within Shewana3_3691 at 4431.910 kb on + strand, within Shewana3_3691 at 4431.910 kb on + strand, within Shewana3_3691 at 4431.910 kb on + strand, within Shewana3_3691 at 4431.910 kb on + strand, within Shewana3_3691 at 4431.917 kb on - strand, within Shewana3_3691 at 4431.918 kb on - strand, within Shewana3_3691 at 4432.070 kb on + strand, within Shewana3_3691 at 4432.070 kb on + strand, within Shewana3_3691 at 4432.078 kb on - strand, within Shewana3_3691 at 4432.084 kb on + strand, within Shewana3_3691 at 4432.134 kb on - strand, within Shewana3_3691 at 4432.264 kb on - strand, within Shewana3_3691 at 4432.315 kb on - strand, within Shewana3_3691 at 4432.498 kb on - strand, within Shewana3_3691 at 4432.554 kb on + strand, within Shewana3_3691 at 4432.554 kb on + strand, within Shewana3_3691 at 4432.794 kb on + strand at 4432.802 kb on - strand at 4432.809 kb on - strand at 4432.839 kb on - strand at 4432.946 kb on + strand at 4432.957 kb on - strand at 4433.170 kb on - strand, within Shewana3_3692 at 4433.316 kb on - strand, within Shewana3_3692 at 4433.392 kb on + strand, within Shewana3_3692 at 4433.503 kb on + strand, within Shewana3_3692 at 4433.602 kb on - strand, within Shewana3_3692 at 4433.602 kb on - strand, within Shewana3_3692 at 4433.602 kb on - strand, within Shewana3_3692 at 4433.617 kb on + strand, within Shewana3_3692 at 4433.713 kb on - strand, within Shewana3_3692 at 4433.724 kb on + strand, within Shewana3_3692 at 4433.755 kb on + strand, within Shewana3_3692
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 4,430,916 - Shewana3_3690 0.68 -1.3 4,430,962 + Shewana3_3690 0.71 -1.6 4,430,962 + Shewana3_3690 0.71 -0.7 4,430,987 - Shewana3_3690 0.73 +0.4 4,431,017 - Shewana3_3690 0.75 -0.6 4,431,307 - +2.0 4,431,355 + +0.8 4,431,355 + +0.4 4,431,511 - +0.9 4,431,747 - +0.3 4,431,753 - -1.0 4,431,886 + Shewana3_3691 0.21 -0.2 4,431,893 + Shewana3_3691 0.22 -1.2 4,431,901 - Shewana3_3691 0.22 -0.5 4,431,910 + Shewana3_3691 0.23 +0.2 4,431,910 + Shewana3_3691 0.23 -0.8 4,431,910 + Shewana3_3691 0.23 +1.1 4,431,910 + Shewana3_3691 0.23 +0.4 4,431,917 - Shewana3_3691 0.24 +0.6 4,431,918 - Shewana3_3691 0.24 +1.5 4,432,070 + Shewana3_3691 0.37 +1.1 4,432,070 + Shewana3_3691 0.37 -0.5 4,432,078 - Shewana3_3691 0.38 -2.2 4,432,084 + Shewana3_3691 0.38 +0.3 4,432,134 - Shewana3_3691 0.43 +1.4 4,432,264 - Shewana3_3691 0.54 -0.0 4,432,315 - Shewana3_3691 0.58 +0.6 4,432,498 - Shewana3_3691 0.74 +0.6 4,432,554 + Shewana3_3691 0.79 +0.3 4,432,554 + Shewana3_3691 0.79 +0.5 4,432,794 + -0.5 4,432,802 - +0.0 4,432,809 - +0.8 4,432,839 - -0.8 4,432,946 + -1.0 4,432,957 - +0.5 4,433,170 - Shewana3_3692 0.31 -1.0 4,433,316 - Shewana3_3692 0.45 -0.4 4,433,392 + Shewana3_3692 0.53 +0.5 4,433,503 + Shewana3_3692 0.64 -1.5 4,433,602 - Shewana3_3692 0.74 +0.3 4,433,602 - Shewana3_3692 0.74 -1.1 4,433,602 - Shewana3_3692 0.74 +4.9 4,433,617 + Shewana3_3692 0.75 -0.4 4,433,713 - Shewana3_3692 0.85 -0.2 4,433,724 + Shewana3_3692 0.86 +0.5 4,433,755 + Shewana3_3692 0.89 +0.6
Or see this region's nucleotide sequence