Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3506 and Shewana3_3507 are separated by 161 nucleotides Shewana3_3507 and Shewana3_3508 are separated by 210 nucleotides Shewana3_3508 and Shewana3_3509 are separated by 80 nucleotides
Shewana3_3506: Shewana3_3506 - 5-formyltetrahydrofolate cyclo-ligase (RefSeq), at 4,207,158 to 4,207,835
_3506
Shewana3_3507: Shewana3_3507 - short chain dehydrogenase (RefSeq), at 4,207,997 to 4,208,716
_3507
Shewana3_3508: Shewana3_3508 - putative thiol-disulphide oxidoreductase DCC (RefSeq), at 4,208,927 to 4,209,316
_3508
Shewana3_3509: Shewana3_3509 - malate dehydrogenase (RefSeq), at 4,209,397 to 4,210,332
_3509
Position (kb) 4207
4208
4209 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 4207.112 kb on + strand at 4207.254 kb on + strand, within Shewana3_3506 at 4207.334 kb on - strand, within Shewana3_3506 at 4207.461 kb on + strand, within Shewana3_3506 at 4207.490 kb on + strand, within Shewana3_3506 at 4207.719 kb on + strand, within Shewana3_3506 at 4207.810 kb on - strand at 4207.882 kb on + strand at 4207.934 kb on + strand at 4208.201 kb on - strand, within Shewana3_3507 at 4208.225 kb on + strand, within Shewana3_3507 at 4208.233 kb on - strand, within Shewana3_3507 at 4208.428 kb on - strand, within Shewana3_3507 at 4208.490 kb on - strand, within Shewana3_3507 at 4208.563 kb on + strand, within Shewana3_3507 at 4208.563 kb on + strand, within Shewana3_3507 at 4208.564 kb on + strand, within Shewana3_3507 at 4208.572 kb on - strand, within Shewana3_3507 at 4208.572 kb on - strand, within Shewana3_3507 at 4208.577 kb on + strand, within Shewana3_3507 at 4208.605 kb on + strand, within Shewana3_3507 at 4208.605 kb on + strand, within Shewana3_3507 at 4208.760 kb on - strand at 4208.760 kb on - strand at 4208.985 kb on + strand, within Shewana3_3508 at 4208.985 kb on + strand, within Shewana3_3508 at 4209.074 kb on + strand, within Shewana3_3508 at 4209.074 kb on + strand, within Shewana3_3508 at 4209.082 kb on - strand, within Shewana3_3508 at 4209.139 kb on + strand, within Shewana3_3508 at 4209.185 kb on + strand, within Shewana3_3508 at 4209.491 kb on - strand, within Shewana3_3509 at 4209.650 kb on + strand, within Shewana3_3509
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 4,207,112 + -0.8 4,207,254 + Shewana3_3506 0.14 +1.2 4,207,334 - Shewana3_3506 0.26 +0.5 4,207,461 + Shewana3_3506 0.45 -1.1 4,207,490 + Shewana3_3506 0.49 -1.2 4,207,719 + Shewana3_3506 0.83 +1.4 4,207,810 - +0.4 4,207,882 + +0.6 4,207,934 + +0.1 4,208,201 - Shewana3_3507 0.28 +0.0 4,208,225 + Shewana3_3507 0.32 -0.5 4,208,233 - Shewana3_3507 0.33 -1.4 4,208,428 - Shewana3_3507 0.60 -0.2 4,208,490 - Shewana3_3507 0.68 -1.4 4,208,563 + Shewana3_3507 0.79 +0.0 4,208,563 + Shewana3_3507 0.79 +0.6 4,208,564 + Shewana3_3507 0.79 +0.2 4,208,572 - Shewana3_3507 0.80 -0.9 4,208,572 - Shewana3_3507 0.80 +0.4 4,208,577 + Shewana3_3507 0.81 +0.6 4,208,605 + Shewana3_3507 0.84 -0.9 4,208,605 + Shewana3_3507 0.84 -0.9 4,208,760 - +0.4 4,208,760 - +0.4 4,208,985 + Shewana3_3508 0.15 -1.0 4,208,985 + Shewana3_3508 0.15 +3.0 4,209,074 + Shewana3_3508 0.38 +0.8 4,209,074 + Shewana3_3508 0.38 -0.9 4,209,082 - Shewana3_3508 0.40 +0.5 4,209,139 + Shewana3_3508 0.54 +0.4 4,209,185 + Shewana3_3508 0.66 +0.3 4,209,491 - Shewana3_3509 0.10 -5.4 4,209,650 + Shewana3_3509 0.27 -4.5
Or see this region's nucleotide sequence