Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3014

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3013 and rplS are separated by 297 nucleotidesrplS and trmD are separated by 34 nucleotidestrmD and rimM are separated by 15 nucleotides Shewana3_3013: Shewana3_3013 - phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq), at 3,620,298 to 3,621,389 _3013 Shewana3_3014: rplS - 50S ribosomal protein L19 (RefSeq), at 3,621,687 to 3,622,040 rplS Shewana3_3015: trmD - tRNA (guanine-N(1)-)-methyltransferase (RefSeq), at 3,622,075 to 3,622,821 trmD Shewana3_3016: rimM - 16S rRNA-processing protein RimM (RefSeq), at 3,622,837 to 3,623,367 rimM Position (kb) 3621 3622 3623Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3620.811 kb on - strand, within Shewana3_3013at 3621.032 kb on - strand, within Shewana3_3013at 3621.169 kb on - strand, within Shewana3_3013

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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3,620,811 - Shewana3_3013 0.47 -0.5
3,621,032 - Shewana3_3013 0.67 -0.2
3,621,169 - Shewana3_3013 0.80 -4.5

Or see this region's nucleotide sequence