Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2715

Experiment: succinate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2714 and Shewana3_2715 are separated by 170 nucleotidesShewana3_2715 and Shewana3_2716 are separated by 254 nucleotides Shewana3_2714: Shewana3_2714 - alpha/beta hydrolase fold (RefSeq), at 3,244,479 to 3,245,441 _2714 Shewana3_2715: Shewana3_2715 - 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq), at 3,245,612 to 3,246,661 _2715 Shewana3_2716: Shewana3_2716 - hypothetical protein (RefSeq), at 3,246,916 to 3,248,286 _2716 Position (kb) 3245 3246 3247Strain fitness (log2 ratio) -2 -1 0 1at 3244.978 kb on - strand, within Shewana3_2714at 3244.983 kb on - strand, within Shewana3_2714at 3245.028 kb on - strand, within Shewana3_2714at 3245.091 kb on - strand, within Shewana3_2714at 3245.132 kb on - strand, within Shewana3_2714at 3245.174 kb on - strand, within Shewana3_2714at 3245.206 kb on - strand, within Shewana3_2714at 3245.367 kb on - strandat 3245.569 kb on - strandat 3245.574 kb on - strandat 3245.592 kb on - strandat 3245.647 kb on - strandat 3245.732 kb on - strand, within Shewana3_2715at 3245.807 kb on - strand, within Shewana3_2715at 3245.895 kb on + strand, within Shewana3_2715at 3246.399 kb on - strand, within Shewana3_2715at 3246.628 kb on - strandat 3246.804 kb on + strandat 3246.810 kb on - strandat 3246.818 kb on + strandat 3247.047 kb on - strandat 3247.331 kb on - strand, within Shewana3_2716at 3247.353 kb on - strand, within Shewana3_2716at 3247.360 kb on + strand, within Shewana3_2716at 3247.592 kb on + strand, within Shewana3_2716

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
remove
3,244,978 - Shewana3_2714 0.52 -0.0
3,244,983 - Shewana3_2714 0.52 -1.2
3,245,028 - Shewana3_2714 0.57 -1.0
3,245,091 - Shewana3_2714 0.64 +0.3
3,245,132 - Shewana3_2714 0.68 -0.1
3,245,174 - Shewana3_2714 0.72 -2.1
3,245,206 - Shewana3_2714 0.75 -0.3
3,245,367 - +0.4
3,245,569 - +0.7
3,245,574 - -0.2
3,245,592 - -0.6
3,245,647 - -0.3
3,245,732 - Shewana3_2715 0.11 -0.3
3,245,807 - Shewana3_2715 0.19 -1.1
3,245,895 + Shewana3_2715 0.27 -1.6
3,246,399 - Shewana3_2715 0.75 -1.3
3,246,628 - +0.5
3,246,804 + +0.0
3,246,810 - -1.4
3,246,818 + +0.2
3,247,047 - -0.8
3,247,331 - Shewana3_2716 0.30 -0.4
3,247,353 - Shewana3_2716 0.32 +0.2
3,247,360 + Shewana3_2716 0.32 -0.2
3,247,592 + Shewana3_2716 0.49 +0.9

Or see this region's nucleotide sequence