Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2667

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2665 and Shewana3_2666 are separated by 9 nucleotidesShewana3_2666 and Shewana3_2667 are separated by 108 nucleotidesShewana3_2667 and Shewana3_2668 are separated by 279 nucleotides Shewana3_2665: Shewana3_2665 - peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq), at 3,182,318 to 3,182,809 _2665 Shewana3_2666: Shewana3_2666 - UDP-2,3-diacylglucosamine hydrolase (RefSeq), at 3,182,819 to 3,183,538 _2666 Shewana3_2667: Shewana3_2667 - tRNA hydroxylase (RefSeq), at 3,183,647 to 3,184,417 _2667 Shewana3_2668: Shewana3_2668 - hypothetical protein (RefSeq), at 3,184,697 to 3,185,293 _2668 Position (kb) 3183 3184 3185Strain fitness (log2 ratio) -1 0 1at 3183.752 kb on - strand, within Shewana3_2667at 3183.889 kb on + strand, within Shewana3_2667at 3184.075 kb on - strand, within Shewana3_2667at 3184.114 kb on + strand, within Shewana3_2667at 3184.225 kb on - strand, within Shewana3_2667at 3184.238 kb on + strand, within Shewana3_2667at 3184.475 kb on + strandat 3184.475 kb on + strandat 3184.482 kb on + strandat 3184.482 kb on + strandat 3184.553 kb on - strandat 3184.599 kb on - strandat 3184.610 kb on - strandat 3184.728 kb on - strandat 3184.892 kb on + strand, within Shewana3_2668at 3184.987 kb on - strand, within Shewana3_2668at 3185.037 kb on + strand, within Shewana3_2668at 3185.147 kb on + strand, within Shewana3_2668

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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3,183,752 - Shewana3_2667 0.14 -1.1
3,183,889 + Shewana3_2667 0.31 +0.0
3,184,075 - Shewana3_2667 0.56 -0.5
3,184,114 + Shewana3_2667 0.61 -0.1
3,184,225 - Shewana3_2667 0.75 -1.4
3,184,238 + Shewana3_2667 0.77 +0.6
3,184,475 + -0.7
3,184,475 + -0.7
3,184,482 + -0.2
3,184,482 + -0.0
3,184,553 - -0.9
3,184,599 - -1.1
3,184,610 - -0.8
3,184,728 - -1.1
3,184,892 + Shewana3_2668 0.33 -1.2
3,184,987 - Shewana3_2668 0.49 +0.7
3,185,037 + Shewana3_2668 0.57 -0.3
3,185,147 + Shewana3_2668 0.75 -0.3

Or see this region's nucleotide sequence